KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111808644
Entry
111808644         CDS       T05351                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpep03041]
    111808644
Spliceosome [BR:cpep03041]
 Complex B
  Other components
   Complex B specific factors
    111808644
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 LisH_TPL Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_DCAF4 Beta-prop_NWD2_C Beta-prop_Nup120_160 Ge1_WD40 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_SPT8 Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N DUF7165 VPS8_N Beta-prop_LRRK2 Beta-prop_WDR75_2nd zf_topless Beta-prop_IFT122_2nd Utp8_b_propeller Beta-prop_IP5PC_F WD_LRWD1 WD40_like 7TMR-HDED
Other DBs
NCBI-GeneID: 111808644
NCBI-ProteinID: XP_023550527
LinkDB
Position
LG13:complement(9305642..9318576)
AA seq 513 aa
MSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSIETFVADVNSGRWDAI
LPQVSQLKLPRNILEDLYEQIVLEMIELRELDTARAILRQTQVMGVMKQEQPERYLRLEH
LLVRTYFDPNEAYQDSTKEKRRAQIAQALAAEVTVVAPSRLMALIGQSLKWQQHQGLLPP
GTQFDLFRGTAAMKQDVEDVYPTTLSHTIKFGTKSHAESARFSPDGQFLVSCSVDGFIEV
WDYISGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMIASGSQDGKIKVWRVRTGQCLR
RLERAHSQGVTSVVFSRDGTQLLSASFDTTARIHGLKSGKLLKEFRGHSSYVNDAVFTND
GARVITASSDCTVKVWDVKTTDCLHTFKPPPPLRGGDASVNSVHIFPKNADLIVVCNKTS
SIYIMTLQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCIGEDRNMYCFSHQSGKLEHLM
KVHEKDVIGVSHHPHRNLVATYSEDSTMKLWRP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctacactcgaaatcgaagctagagatgtcatcaagatcgtgctacagttttgtaaa
gaaaattcattgcaccaaacatttcagacgttacaaaatgagtgtcaggtttctttgaat
accgtagacagcattgaaacttttgttgccgatgtaaactctggacgctgggatgctata
ttgcctcaagtgtctcaacttaagcttccaagaaatatattggaggacttatatgaacag
attgtattagaaatgattgagcttcgtgagttggatactgctcgtgctattttgaggcag
actcaagtgatgggtgtcatgaagcaggagcaacctgagagatacttgcgacttgagcat
ctattagtccgaacatactttgatccgaacgaggcttatcaagattcaacaaaagagaaa
cgccgagcgcaaattgcacaagcccttgcagctgaagttactgtggttgcaccttctcga
ttaatggctttaattggccagtctctaaaatggcaacaacaccaaggcttacttcctccg
ggaacgcagtttgacttatttcgtggaactgctgctatgaaacaagatgtggaggatgtt
tatccaacaactctttctcacacaataaagtttggtacaaaaagtcatgcagaatctgct
cggttctcaccagatgggcagtttctagtttcttgctctgtggatggatttattgaggtc
tgggattatataagtggtaaactcaagaaggaccttcagtatcaggctgatgaaactttt
atgatgcatgatgatccggtcctttgcgttgattttagtagagactcagagatgattgct
tctggttcacaagatgggaaaatcaaagtatggcgtgtaaggactggccaatgcttgcgg
cgtctcgaacgtgctcattctcagggagttacgagtgttgttttctctcgtgatggaacc
cagttgttgagtgcatcttttgacaccacagcaagaatccatggcttaaagtctgggaaa
ctattgaaggaattccgtggccattcatcatatgtgaatgatgcagtctttactaatgat
ggagcacgtgtcattaccgcatctagtgattgcaccgtcaaggtttgggatgtgaagaca
actgattgtctgcatacgttcaagccaccgcctccattaaggggaggagatgcctctgtg
aattcagttcatatcttccccaaaaatgccgatcttattgttgtttgtaacaagacatcg
tcaatatacatcatgacattgcaagggcaggttgtcaagagcttctcatctggtaaaaga
gaagggggagacttcgttgcagcttgcgtatcaccaaaaggtgaatggatatactgcatt
ggtgaagacaggaatatgtattgcttcagccaccaatccggtaagctggagcatctcatg
aaggttcatgagaaggacgtgataggtgtgagtcatcatcctcatagaaatctagttgct
acttatagtgaagacagcacaatgaaattatggaggccttga

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