Cucurbita pepo subsp. pepo (vegetable marrow): 111808758
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Entry
111808758 CDS
T05351
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
111808758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111808758
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111808758
Transcription machinery [BR:
cpep03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
111808758
RNA polymerase I system
111808758
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
111808758
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW2_Spt5
KOW6_SPT51-2
KOW
KOW4_SPT5
Spt5-NGN
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
ProQ_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
111808758
NCBI-ProteinID:
XP_023550686
LinkDB
All DBs
Position
LG13:6250511..6260346
Genome browser
AA seq
1040 aa
AA seq
DB search
MPRRRDDDDDDDIDADEEEYEEEMEQPLDDEDEEEDRSSRKRRRSNFIDDAAEEDEDEEE
EEEDDDDEDFGGGGRRRRAKRPSGSQFLDIEAEVDSDDDEEDDDGEDDFIVDNGADIPDE
DENRRMHRRPLLPREDEQEDVEALERRIQARYARSNHMEYDEETTEVEQQALLPSVRDPK
LWMVRCAIGREREAAVCLMQKCIDRGPEMQIRSAVALDHLKNYIYIEADKEAHVREACKG
LRNMYAQKITLVPIKEMTDVLSVESKAIDLARDTWVRLKIGTYKGDLAKVVDVDNVRQRV
TVKLIPRIDLQALAIKLEGREVPKKKAFVPPPRFMNIDEARELHIRVERRRDPITGEYFE
NIGGMFFKDGFLYKTMSMKSINAQNIKPTFDELEKFRKPGENGDGDIASLSTLFANRKKG
HFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNERELCKYFEPGNHV
KVVSGTQEGATGMVVKVDQHVLIILSDTTKEHIRVFADDVVESSEVTTGVTRIGDYELHD
LVLLDNMSFGVIIRVESEAFQVLKGIPDRPEVDIVKLREIKSKIDKKISVQDRFNNTISS
KDVVRILEGPCKGKQGPVEHIYRGILFVYDRHHLEHAGFICAKSQACVVVGGSRTNGNRN
GKSYSRFAGLGTPPRFPQSPKRFPRGGPPNNGGGRHRGGRGHHDGLVGSTVKVRLGPYKG
YRGRVVEIKGQMVRVELESQMKVVTVDRNFISDNVAVSTPHRESSRYGMGSETPMHPSRT
PLHPYMTPMRDIGTTPIHDGMRTPMRDRAWNPYAPMSPSRDNWEEGNPATWGSSPQYQTG
SPPSRTYEAPTPGSGWANTPGGSYSDAGTPRDGGSAYANAPSPYLPSTPGGQPMTPNPAS
YLPGTPGGQPMTPGTGGLDMMSPVIGGDSEGPWYMPDILVNVRRSGDELVMGVIREVLPD
GGCRVGLGSSGNGETVTASSSEIEVIVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKV
DDTLDVKILDLVILAKLAQP
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgtcgcagggatgacgacgatgacgacgacattgacgccgatgaggaagagtat
gaggaggagatggaacagcctctggatgacgaggatgaagaggaagatcgttcgagtagg
aagcggcggagatcaaattttatagatgacgctgcggaggaggatgaggacgaggaggag
gaagaagaggatgacgatgatgaagattttggtggcggtggtcggcggcggcgtgccaag
aggcctagcggttctcagtttttggatattgaggcggaggtcgatagcgatgacgatgaa
gaggacgacgatggagaggacgattttattgttgataatggagctgatatacccgatgaa
gatgaaaatagaaggatgcatcgccgcccattgctaccacgggaggatgaacaggaggat
gttgaagcacttgaaagaaggattcaagcgagatatgcaaggtcaaatcatatggaatat
gacgaggagaccacagaagtggagcagcaagctcttttaccttctgtaagggatccaaaa
ttgtggatggttagatgcgcgattggccgagaacgggaggctgctgtttgtctaatgcaa
aaatgcattgatagagggcctgaaatgcaaataagatctgcagttgctcttgaccatttg
aagaactatatatatattgaagccgacaaagaggcccatgttagagaggcttgtaaaggt
ctacgcaacatgtacgcacaaaagataacactcgttccaattaaagaaatgactgatgtc
ctctctgttgaaagcaaagcaattgatcttgctagagatacatgggttaggctgaagatt
gggacatataagggggatcttgccaaggtggtggatgttgataatgtgcggcagagggtt
actgtgaaactgattccacggatagacctacaggctcttgcaattaaattggaagggaga
gaagttcctaaaaagaaggcatttgttcctccaccacgctttatgaatattgatgaagct
agagagttgcatatccgtgtggagcgcagacgtgatcccattactggagaatactttgag
aatataggtggcatgtttttcaaggatggtttcttgtataaaacaatgtccatgaagtcg
ataaatgcccaaaacataaagccgacttttgacgagcttgaaaaatttcgaaagcctgga
gaaaatggagatggggatattgctagtttgtctactttgtttgcgaaccgaaagaaaggg
cactttatgaaaggtgatgctgtgattgttgttaagggggatctcaagaatttgaaagga
tgggttgagaaagtagaggaagagaatgtccacatcagaccagaaatgaagggccttccc
aaaacacttgcggtgaatgaaagagaactttgcaagtactttgagcctgggaatcatgta
aaagttgtatcgggcactcaggaaggggctactggtatggttgtaaaggtggaccagcat
gtgcttattatattatctgatacaaccaaggaacatattcgggtatttgctgatgatgtt
gttgagagctccgaggtaacaactggcgtgactagaattggggattatgaacttcacgat
cttgtgttattggataatatgagctttggcgtaattatccgtgtagaaagtgaggctttc
caggttcttaagggtattcctgatagacctgaggttgatattgtgaagttaagggaaata
aaaagtaagattgacaagaaaatcagtgttcaagatcggttcaataacacaatttcctcc
aaagacgtagtgaggattcttgaaggaccttgtaagggaaaacaaggtccagtggagcac
atatacagaggaattctgtttgtttatgatcgccatcacttggaacatgcaggctttata
tgtgctaaatcacaggcttgtgttgttgtgggtggatcccgaactaatggaaatagaaat
ggtaagtcatattctaggtttgctggccttgggaccccacctcgttttcctcagtcacct
aagagatttcctagaggaggccctcccaataatggtgggggaagacatagaggtgggaga
gggcatcatgatgggttggttggatcaacagtaaaagttcggctgggtccttataagggt
taccgtggacgtgttgttgaaataaaaggccaaatggttcgagtagagcttgagtctcaa
atgaaagttgtcacagttgaccgcaattttatctcagataatgttgctgtttcgaccccc
catcgtgaatcatctagatatggtatgggaagtgaaactcccatgcatccttctcgtact
cccctgcatccatacatgaccccaatgagagatattggaacaacaccaattcatgatggc
atgaggacacctatgcgagatcgagcatggaatccctatgcacccatgagtccgtcaagg
gataactgggaggaagggaatcctgcaacttggggaagtagcccacagtaccagacagga
agccctccttcacggacatacgaagctccaactcctggttctgggtgggccaacactcct
ggtggcagttacagtgatgctggtaccccccgggatggtggttcagcctatgcaaatgct
ccaagcccatacttgccttcaactcctggtggacagccgatgacacctaatccagcctcc
tatcttcctggtactcctggtgggcagccaatgacaccaggcacaggtggtctggatatg
atgtctcctgttataggtggtgattccgaaggaccatggtacatgccagacatattagtc
aatgtccggaggtcaggagatgagctcgtcatgggagtaatccgtgaggtgcttccggat
ggcgggtgtagggtaggtcttggatcaagtggaaatggcgaaacggtaacagcctcttcc
agcgaaatagaagtgatcgttcctagaaagtcagacaagatcaagataatgggtggtgca
ctgcgtggtgccaccggcaaattgatcggcgtagacggcacggatggaattgtgaaggta
gatgacactcttgatgttaagattttggatttagttattcttgcaaaactagctcaacca
taa
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integrated database retrieval system
