Cucurbita pepo subsp. pepo (vegetable marrow): 111808767
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Entry
111808767 CDS
T05351
Name
(RefSeq) replication factor C subunit 3-like
KO
K10756
replication factor C subunit 3/5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03410
Base excision repair
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111808767
03410 Base excision repair
111808767
03420 Nucleotide excision repair
111808767
03430 Mismatch repair
111808767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpep03032
]
111808767
03036 Chromosome and associated proteins [BR:
cpep03036
]
111808767
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111808767
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
111808767
DNA Replication Termination Factors
ELG1-RFC complex
111808767
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
111808767
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
111808767
Check point factors
HRAD17(Rad24)-RFC complex
111808767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_22
AAA_16
AAA_assoc_2
AAA_11
ATPase_2
AAA_5
RCF1-5-like_lid
AAA_24
AAA_14
DUF815
AAA_7
RuvB_N
AAA_30
bpMoxR
AAA_19
ResIII
nSTAND3
AAA_3
DNAX_ATPase_lid
AAA_28
SLFN-g3_helicase
TniB
AAA_18
TIP49
AAA_2
AAA_25
Mg_chelatase
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
111808767
NCBI-ProteinID:
XP_023550699
LinkDB
All DBs
Position
LG13:6038084..6047006
Genome browser
AA seq
363 aa
AA seq
DB search
MSEAIAVMDIDDDNGNNEDEKSVEGKNVANPADAPDGKAIPWVEKFRPKSLADVAAHRDI
VDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVV
RQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHV
NKIIPALQSRCTRFRFAPLDNVHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALN
ILQSTHMASQHITEEAVYLCTGNPLPKDIEQISFWLLNEPFSDSFKRIYEIKTRKGLALV
DIVREVTLFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVA
AAQ
NT seq
1092 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagcaatcgccgtgatggatattgacgacgataatggcaacaacgaagatgaa
aagtcagtcgagggcaaaaacgtcgccaatcctgcagacgcacccgacggtaaagcgata
ccctgggtcgagaagttccggcccaagtctctcgccgatgttgctgcccaccgcgacatt
gtagacaccatcgacaagctgaccagtgagaataggctgccacatctcctgttgtatggc
cctcctggcactggcaagacatcaaccattctagcggttgctcgcaagctttatggaaca
aactaccacaacatgatactggagctgaatgcatcagacgatagagggatcgatgttgtt
agacagcagattcaagattttgcaagtacccaaagcttttcatttggggcaaaagcatct
gtaaaattggtactattggacgaggcagatgccatgactaaagatgcacagtttgctttg
cgtagagtaattgagaaatacacaaaaaatacacggtttgctcttatctgtaatcatgtc
aataagattattccagcgttacaatcaaggtgtacccgttttcgatttgctccccttgat
aacgttcatgtcactgaacgactcagatatgttattgaggctgagaggttggacgtaact
gagggtggcttagctgcccttgttcgactttgcactggtgatatgagaaaggctttaaat
attctgcagtcaacgcatatggcttcccagcatattaccgaagaagctgtctatctctgc
acaggaaatccattgcctaaagacatagagcaaatatccttttggctgctgaatgaacca
ttttctgacagttttaagcgaatatatgaaataaagaccagaaaaggattggctttggtt
gatatagtgagagaagtcactctgtttgttttcaagatcaagatgccatcggatgtcaga
gttcagttgattaatgatctggctgacatagagtacaggatgagtttcggatgcaatgac
aagttacaactcggatcgctcatctcatcttttactcgagctagatctgcacttgtcgct
gctgcacagtag
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integrated database retrieval system
