Cucurbita pepo subsp. pepo (vegetable marrow): 111809366
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Entry
111809366 CDS
T05351
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111809366
09122 Translation
03013 Nucleocytoplasmic transport
111809366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111809366
03041 Spliceosome [BR:
cpep03041
]
111809366
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
111809366
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111809366
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111809366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
LIM_bind
Motif
Other DBs
NCBI-GeneID:
111809366
NCBI-ProteinID:
XP_023551585
LinkDB
All DBs
Position
LG01:complement(15804556..15840088)
Genome browser
AA seq
1886 aa
AA seq
DB search
MALPPLECMYVVESNLREWKSGNSSFRVPNPVPVLRFLYELCWTMVRGELPFQKCKAALD
SVEFTGKMSAEELGSSFADVITQLAQDITLPGEYRVRLLKLAKWLVESAFVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCHVTDAS
NNNLPGSTIGIIKSLIGHFDLDPNRVFDIVLECFELQPENSVFVELIPIFPKSHASQILG
FKFQYYQRIEVNSPVPVGLYKLAALLVKEKFIDLDSIYAHLLPKEEEAFEHYESFSSKRL
DEANRIGKINLAATGKDLMDDEKQGDVSIDLFAALDMESEAVNERSPELENNQTLGLLTG
FLSVGDWYHAHVLFNRLLPLNPVEHLPICNCLFRFIEESISSAYSIVRQHYYQSFGTSSG
ASIDTRNFPVGGSFIDLPRELFQMLAAAGPYLYRDTILLQKVCRVLRGYYMSAIEFVNSV
ESGSNPEFVLQAGSRVPHLHLKEARLKIEEALGMCILPSLQLIPANPAVGQGIWEVMNLL
PYEVRYRLYGEWEKDDEKIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
LTVLRTILHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLVQGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLINQLKKGQGIELVLLQELVQQMANVQYTENL
TEEQLDAMAGSETLRYQATSFGVTRNNKALIKSSNRLRDSLLSKDEPKLAVPLLLLISQH
RSVVVINANAPYIKMVSEQFDRCHGTLLQYVEFLSSAVTPASAYAQLIPSLNELAQLYHL
DPEVAFLIYRPIMRLFKCQGGSDIFWPLDGNDANVASNNSDSESAECSADVVLELGSSRK
PVRWSDLLDAVKSMLPPKAWNSLSPDLYTTFWGLTLYDLYVPQSRYESEIAKQHSALKAL
EELSDNSSSAINKRKKDKERIQESLDRLSNELNKHEENVASVRRRLSREKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEAGRLGRFLYETLKIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITRLLIQCLESTEYMEIRNALIMLTKISNVFPVTRKSGINLEKRVAKIKSDE
REDLKVLATGVAAALAARKPSWVTDEEFGMGYLELKTAPSLASKSSASNLAASQSNSIYS
SQNEHGGGKPTAVPSSDSGNMAKDHSLRSRTSDVRTDKIDGFSVPKSELGHGKLKGTSLN
GPDSQSLVPSTSVHSGSSRVVEGQKPGDDLSRTSNEGSSKVIFKTSSESEQLRVSAKRNA
PAGILSKAPKQDTTKDEIRSGKAASKNHGSSTSDRDLPIHATDGGRHGSSYKTSSVMPND
YTQSSLTRGLSSSLKASDGHAIELKAESGVGRTSDSRASSVKENGTEALEVAKSSSSRLA
HSPRHDNSASGSRSSDKLPKRASPAEEPDRQGKRRKGDGESRDVDGDFRNPDKDRSIDTR
SVDADKIGMDEQSGYRGSDKPLDRTKDKVNERYDRDYKDRAERSEKSRGDDPSVEKTRDR
SIERYGRERSVEKVERVSDRYPDKSKDERDKDDRSKLRYNDTATEKSHVDDRFHRQSLPP
PPPLPPHAVPQSVNSGRREEDADRRFGTTRHSQRLSPRHEEKERRQSEENLISQDDTKRR
REEEFRERKREEREVGISLKVDDRERERERDKANLLKEDMDAAAASKRRKLKREHLSLAE
AGEYSPVGAPPSLVGGGVSQSYDGRERGDRKGVMMQRASYLDDPGLRIHGKEVVNKMTRR
EADLMYDREWDDDKRMRADQKRRHRK
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atggctctccctccccttgagtgtatgtatgtcgttgaaagcaatcttcgcgaatggaag
tccggaaactcgagctttagggttcccaaccctgtccctgtgcttcgcttcctttacgag
ctttgctggaccatggttcgaggtgaattgccgttccagaagtgtaaagcagcattggat
tcagtagagttcacgggcaaaatgtctgcggaggagttaggatcgagttttgctgatgtc
attacccaattggcccaagatatcacattacccggagagtatcgtgttcgtcttttaaaa
ttggctaaatggctggttgaatctgcatttgttccattgaggctttttcaagaacggtgt
gaggaagaatttttatgggaggctgaaatgataaagattaaggcgcaggaattgaaaagc
aaagaggtcagagtaaatactcgtcttctttatcagcaaacaaagtttaatcttctgcgt
gaagaaagcgagggctatgccaagttggtaacacttctttgccatgtcactgacgcttca
aataacaatttgccgggttcaacaattggtattataaagtcattgattgggcattttgat
ttggacccaaaccgtgtgtttgacattgtcttggagtgttttgaacttcagccagaaaat
agtgtttttgtggagctaattccaatatttcccaagtctcatgcttcacaaatccttggg
ttcaaattccaatattatcagcgcattgaagtgaactcgccagtgccagttgggctttat
aaacttgcagctttactagtgaaggaaaaatttattgatctggatagcatatatgcacat
ctacttcctaaggaggaggaggcatttgagcactatgagtccttttcttccaaacgactt
gatgaggctaacagaataggtaaaataaatcttgcggcaacgggaaaagatctaatggat
gatgagaagcaaggagatgtaagcattgatctttttgctgctcttgatatggaaagtgag
gcagtcaatgaaaggtctccagagctggaaaataatcaaacattgggcttgcttacagga
tttctttctgtgggtgactggtatcatgcacatgtactgtttaatcggcttttacctctc
aatccagtggaacaccttccaatctgtaactgtttgtttaggttcattgaagaatcgatc
tcctctgcgtactctattgttcgtcaacattattatcagagctttgggacctcttcggga
gctagcattgataccaggaattttccggttggtggttcttttatagatcttcctagggaa
ctttttcagatgcttgcagctgctggaccttatctctaccgtgatacaattttgctgcag
aaggtctgtagggtgctgagaggttattatatgtcggcaattgagtttgtcaacagtgtg
gaaagtggttcaaatcctgaatttgttctgcaagctggtagccgggttcctcatcttcac
ttgaaggaagctagattgaaaattgaggaagctttaggaatgtgtatacttccttcgtta
cagttgatacctgccaatccagctgttggtcaaggaatatgggaagtaatgaatcttctt
ccgtatgaggtgcggtatcgtttatatggtgaatgggagaaagatgatgagaagattcca
atggttttggctgcaaggcaaaccgcaaagttggacacacggaggattttgaagcggttg
gctaaggaaaatttgaagcaattgggtaggatggttgcaaaacttgctcatgccaatccg
ttgactgtccttcgcactatattacaccagattgaggcatatagggatatgattactcct
gtagtagatgcattcaagtatctgactcagcttgagtatgacatattagaatatgttgtg
attgaacgtttggtgcaaggagggcgtgataagttgaaggatgatggccttaatctgtca
gattggctccagtcattagcttcattttggggtcacctgtgtaagaagtacccatctatg
gagctaaggggtttgtttcagtatctcattaatcagttgaaaaaaggtcaaggaattgaa
cttgttctcctgcaggaacttgttcaacaaatggccaatgtccaatacacagaaaaccta
actgaggaacagttggatgctatggcaggaagtgagacacttcgttatcaagcaacttct
tttggggttactcgaaataacaaggcgttgatcaagtcaagcaacagactgcgtgactcc
ttgctttctaaggatgaaccaaaattggcagtccctctcttgctacttatttctcaacac
cgttcagtggttgtcataaatgcaaatgctccttatattaagatggtcagtgaacaattt
gatagatgtcatggaactctgcttcaatatgtggaatttcttagtagtgcagttacgcct
gcatcagcttatgctcagttgattccctctctcaatgagcttgcccagctttatcaccta
gatcccgaggttgctttcctgatatatcgaccaataatgaggttatttaagtgtcaaggt
ggttcagatatcttctggccactggatggcaatgatgcaaatgttgcaagcaataattct
gattcggaatcagcagaatgttctgcagacgttgttttggaacttggttcttcacggaaa
cctgtgaggtggtcagatctcctcgatgctgtaaagtctatgttacctccaaaagcttgg
aatagcttgtctccagatctctatactacattttggggtctcacgctctatgatctttat
gttcctcagagtagatatgaatctgaaattgctaagcagcattctgctcttaaagcttta
gaagagctttctgataactcaagttctgcaatcaataaaaggaagaaagacaaagaaaga
attcaagaatctcttgatcgcttgtccaatgaactaaataagcatgaagaaaatgttgct
tctgtacgcagacgactttctcgtgaaaaggataaatggttgagctcctgccctgatact
ttgaaaattaacatggagttccttcagcgatgtatttttccccgctgtacattcagtatg
cctgatgctgtctattgtgctatgtttgtgcacactcttcattcccttggaacaccattt
ttcaatacagtcaaccatattgatgttttgatatgtaaaaccttgcaacccatgatatgc
tgctgcacggaatacgaagcaggcaggcttggaaggtttttatatgagacactaaagata
gcttattattggaagagtgatgaatccatttatgaacgtgaatgtggaaatatgcctgga
ttcgctgtctattataggtatccaaacagtcaaagagtaacgtacggccagttcatcaag
gttcattggaagtggagtcaaagaattacacgattactcatacaatgcttggaatctaca
gagtacatggaaattagaaatgctcttataatgttgacaaaaatttccaacgtttttccc
gtcacaagaaaaagcggaatcaaccttgagaaaagggtcgctaagatcaaaagtgatgaa
agagaagatctgaaggtgttagctactggtgttgccgcagccttggctgctagaaagcct
tcatgggttacagatgaagaatttggcatgggttatcttgaattaaagactgcaccttct
cttgcatcaaagtcttcagctagtaatttagctgccagccaaagtaattccatttattct
tcccaaaatgaacatggtggaggaaagcctactgccgtcccaagttcagattctggaaat
atggccaaagaccattcattgaggtcacgaacttccgacgtgaggacggataaaatagat
ggtttttctgttccaaaatctgaactagggcatgggaaactcaaaggcacttcattgaac
ggaccagattcccaatcacttgtgccctcaacttctgtgcattcaggatcgtcaagagtt
gtggaaggtcaaaaaccaggtgatgacttaagtaggacttcgaatgaaggctcatcaaaa
gttattttcaagacctcttctgaatccgagcagttgagagtttcagcaaaacgaaacgca
cctgctgggattcttagtaaagcaccaaaacaagataccacgaaagatgagattagatct
ggaaaagctgctagcaagaatcatgggtcttccacaagtgatcgggatcttccaattcat
gcaacggatggtggtaggcatggaagttcttataaaacttcttcagttatgccaaatgac
tatacgcaaagttcattaactagaggcttgtcctcatcattaaaagcttcagatggtcac
gctattgaattgaaggcagagagtggagtagggaggacttctgatagtagggcttcgtca
gtaaaggaaaatggtactgaagctcttgaagttgcaaaatcctcttcttccagacttgct
cattctcccagacatgataattctgctagtggttctaggtctagtgataaactgcctaaa
agagctagtcctgctgaagaaccagacagacaaggtaaacgtcggaaaggagatggtgaa
agtagagatgtagatggggattttcgtaaccctgacaaagatagatccatagacacacga
tctgtagatgctgataaaataggaatggatgaacaaagtggttacagaggttcagataaa
cctctggatagaacaaaagataaggtaaatgaaagatacgatagggactacaaagatcgg
gcagagcgttctgagaaatcccgtggagatgatccatcagtagaaaaaacaagagacaga
tcaatagaaagatatggaagagaacgctcggttgagaaagtggaaagagtttctgatagg
tatcctgacaaatctaaggatgaaagagataaagatgataggagtaagttacgatataat
gatacagctacagaaaagtctcatgttgatgatcggttccacagacagagcttgcctcct
ccccctcccttgcctcctcacgcggtccctcaatctgttaatagtgggagaagagaagaa
gatgcagatagaaggtttggaactactagacacagtcaaaggctttctcctagacacgaa
gagaaggaacggagacaatcagaggaaaatttaatttcacaggatgatacaaaacgcaga
agagaggaggaatttcgagaaagaaagagagaagagagagaggtggggatatcattgaag
gtggatgatagggagagggaaagggagagggacaaggcaaaccttttgaaggaggacatg
gacgctgctgctgcctccaagaggcgaaaacttaaaagggagcatctgtcattggcagag
gctggtgagtattctcctgttggcgcaccgccatctctggttggtggtggcgtgtctcaa
tcttatgatggacgagaaagaggagacaggaagggtgtaatgatgcaacgtgccagttac
ttggatgatccaggcttgagaattcatggtaaagaagttgtcaacaagatgaccagacgt
gaagccgatttaatgtacgatcgggaatgggatgatgataaaagaatgagggcggaccaa
aagcggaggcaccggaaataa
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integrated database retrieval system
