KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111809678
Entry
111809678         CDS       T05351                                 
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
  KO
K11805  DDB1- and CUL4-associated factor 7
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    111809678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cpep04121]
    111809678
   03036 Chromosome and associated proteins [BR:cpep03036]
    111809678
Ubiquitin system [BR:cpep04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     111809678
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.3/1.5)
     111809678
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40_CDC20-Fz Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 WD40 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd Beta-prop_Aladin WDR55 Beta-prop_WDR41 Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 MIOS_WD40 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_WDR19_1st
Other DBs
NCBI-GeneID: 111809678
NCBI-ProteinID: XP_023551826
LinkDB
Position
LG14:91265..92785
AA seq 339 aa
MENAAPRSEFMATYDSPHPLYAMAISSAHTHSRNFPNRIALGSFIEQCTNRVDIVSFDPD
SLSIQTHPSLSFDHPYPPTKLMFNPNALSSLRNSSDILASSGDYLRLWQVGDSSIEPLSV
LNNSKTSEFCAPLTSFDWNEVEPKRIGTSSIDTTCTIWDIEKSVVETQFIAHDKEVYDIA
WGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDS
NKVVILDIRSPSVPVAELERHHSSVNAIAWAPRSCRHICSAGDDKQALIWELPMVAGPNG
IDPMSMYSAAHEINQLQWSAAQPDWIALAFSNKMQLLKV
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggaaaacgccgccccaagatccgaattcatggccacctacgactccccgcaccctctc
tatgccatggccatctcttccgcccacacccactctcgcaatttccccaatcgcatagcc
cttggtagcttcatcgaacagtgcaccaaccgtgtcgacattgtgtcttttgatccagat
tccctctccattcaaacgcatccttctctctccttcgaccacccctacccacccaccaag
ctcatgttcaatcccaatgccctctcctctctccgcaactcctccgacatcttggcctcc
tccggcgactatctccgcctctggcaagttggagattcttctatcgaacccctctctgtc
ctcaacaacagcaaaaccagtgaattctgcgcccccttaacttccttcgactggaatgaa
gtcgagcccaagagaattggaacctccagcattgataccacttgtactatttgggatatt
gagaagagcgtggttgaaacccagttcatagctcacgacaaagaggtttatgacattgcg
tggggggaagcccgggtttttgcctccgtttccgctgatgggtcggtcaggattttcgac
ttgagagataaagagcactccaccattatatacgaaagcccccagcccgatacccctttg
cttagactggcttggaacaagcaggacctgcggtacatggccacaattttgatggatagc
aacaaagttgttattttggacattcgctcgccaagtgtgccggttgctgagctggagagg
catcattccagtgtcaatgccattgcctgggctccacggagctgcagacatatttgctcc
gctggggatgacaaacaggcgcttatttgggagttgccaatggttgcaggcccgaatggc
attgatccaatgtccatgtattctgctgcacatgaaattaaccagttgcagtggtccgcc
gcccagcctgattggattgctctggcattttcaaacaagatgcagcttttgaaagtttga

DBGET integrated database retrieval system