Cucurbita pepo subsp. pepo (vegetable marrow): 111809860
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Entry
111809860 CDS
T05351
Name
(RefSeq) histone acetyltransferase KAT6A-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111809860
09122 Translation
03013 Nucleocytoplasmic transport
111809860
03015 mRNA surveillance pathway
111809860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111809860
03041 Spliceosome [BR:
cpep03041
]
111809860
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111809860
Spliceosome [BR:
cpep03041
]
Complex C
Other components
EJC/TREX
111809860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
111809860
NCBI-ProteinID:
XP_023552084
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Position
LG14:complement(3669240..3673753)
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AA seq
700 aa
AA seq
DB search
MSSKSKYQVLDNRPIDQWRVTELKEELKRRKLTIRGLKEDLVKRLDEALRNEREENAEET
NGVDGDPPVTNSDNNQVHVSTAKDSNEDAKKILNVEDVEVQVDRNDSTAAGDDGELKDGA
SLNGCPRVEEGSAIHVTTVETKITVTESVVSEVALGVEGLQNMESKDDENSKVELEIEKS
KPQVDSEDSKSQLDDVKMELEVEHENLKSQQANIVHDSSASDNQVSEVSPVLGSQVRTDS
ISTDSVTINQMIELKENISADHVKLELDVKQEMVEPSSSIIVPDAGESHPMDVEEPSVNK
NVEHSLSNSDVVESPENKDVIEPIVNEDYDVKDMISEVHEKHDDAGFSEKLNLDRSSGDD
SIEDAVENKTVLGNNPKEMGEKNVKSEGLICKEEKVADIAVRGSTADKKYLDTENEVSSL
PAEKRKLHDQAVVGNESVKRQCRWNAENLKIPEPQNAAHTSTSNSKDIHQSITPKRNFSR
SDSTASEDPSKERVVPPSPKPPTNSLKIDRFLRPFTLKAVQELLGKTGSVSSFWMDHIKT
HCYVTYSSVEEAMKTRDAVYNLQWPPNGGRLLIAEFVDPQEVKIRVESPQTPTPAAVAPP
VSTMPPPMQPEPSPRQPRQHFAPSPSLPPPPPTNNLSQAREQLPLPPPPALPDKVDTPIV
TLDDLFKKTKATPRIYYLPLSDEQVQVKRAAAARGKDTKQ
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgaaatcgaaatatcaagttcttgacaatcgacccattgatcagtggagggtt
acggagttgaaagaggagcttaagagacgaaaattaaccatcagaggcctgaaggaagat
ttggtaaaacggttggatgaagcgcttcgaaatgaaagggaagaaaatgcggaggaaacc
aatggtgttgatggtgaccctccagttacaaatagtgacaataaccaagtgcatgtatct
acggcaaaagactcaaatgaagatgctaaaaagattctgaatgtagaagatgttgaagtt
caggttgacaggaatgacagtactgcagctggggacgatggggaacttaaagatggggct
agtctcaatggttgtcctagggtagaagaggggtcggctatccatgtcactactgtggaa
actaaaattacggtaactgaaagtgtggtttctgaagtagcgttaggtgtggaaggtttg
cagaatatggaaagcaaggatgacgaaaattcgaaggtcgagttggagattgagaaatca
aagccccaggtggatagtgaggattcaaagtcccagctggatgatgtgaaaatggagctc
gaggtggagcatgagaatttgaagtctcagcaggcaaatatcgtgcacgactcgtctgct
tcagacaaccaggtatctgaggtcagccctgttttagggtctcaagtaagaactgattct
atttctactgattctgtgacaattaatcaaatgattgaactaaaggaaaatatatctgct
gatcatgtaaaattagaactagatgttaagcaggagatggtggaaccatcatccagcatt
attgtcccagatgctggcgaatcacatccaatggatgttgaagagccttctgtgaacaag
aatgttgaacactcactttcaaacagtgatgttgtggagtcacctgagaacaaagatgtt
atagagcctattgtgaatgaagattatgatgttaaggacatgatttctgaggttcatgag
aagcatgatgacgcggggttttctgaaaagctaaatttagatagaagttctggggacgat
tcaatagaagatgccgtagagaataagactgttttggggaataatcctaaagaaatggga
gagaagaatgtaaaaagtgagggccttatatgcaaagaggaaaaggttgcagacatagca
gtgcgaggttcaactgcagataaaaagtatcttgatacagagaatgaggtttcatctttg
cctgctgaaaaaagaaagcttcatgatcaagcagtggttggaaatgaatctgtaaagaga
cagtgtaggtggaatgctgaaaacctcaaaattccagagcctcaaaacgctgctcataca
tctactagtaattcaaaggacattcatcagtccattactccgaaacgcaacttctccaga
tctgactccacagctagtgaagatccatcgaaggaacgtgttgttccaccatcaccaaaa
cctcccacaaattcactaaaaatcgatcgttttctgcgtccatttaccctcaaagctgtg
caagagcttctgggtaagactggtagtgtctccagtttctggatggatcacatcaagacg
cattgctatgtaacttactcatcggtggaagaagccatgaagactagagatgctgtttac
aacttgcaatggccaccaaatggtgggcgtcttcttatagctgagtttgttgatcctcaa
gaagtaaaaattcgagtggaatctccacagactcctacacctgcggcggttgctccaccg
gtttctactatgcccccaccgatgcaaccagagccttcacctcgtcaaccaaggcagcat
tttgctccgtcaccttcattgccaccacccccacccacaaacaacctttctcaagcaagg
gagcagcttccactcccacccccacctgcacttcccgataaagtcgacactcccatcgtc
acattagatgacctcttcaagaaaaccaaagctactcctcgcatctactatttaccttta
tcagatgaacaggtgcaggtaaaacgtgcagcagcagcaaggggaaaagacaccaagcag
taa
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