KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111809929
Entry
111809929         CDS       T05351                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111809929
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cpep03041]
    111809929
   03036 Chromosome and associated proteins [BR:cpep03036]
    111809929
Spliceosome [BR:cpep03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    111809929
 Complex B
    111809929
 Complex C
   U2 SnRNP specific factors
    111809929
Chromosome and associated proteins [BR:cpep03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    111809929
SSDB
Motif
Pfam: SF3b1 HEAT_EZ HEAT Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME
Other DBs
NCBI-GeneID: 111809929
NCBI-ProteinID: XP_023552172
LinkDB
Position
LG14:1143400..1147741
AA seq 1259 aa
MDLEIAKTQEERRKLEQQLASLSSVTFDTDLYGSNDKAGYVTSIPVNEDDENLEALDNEV
ARKLASYTAPKSLLKEMPRGGEEDDDIGFKKPQRIIDREDDYRKRRLNRVISPERHDAFA
AGEKTPDPSVRTYAEVMREEALKREREETLRAIAKKKEEEEAAKASGEKPKESAAAPQKR
RNRWDQSQDDGGEKKAKTSDWDLPDTTPGRWDATPGRVGDATPGVGRRNRWDETPTPGRL
ADLDATPAGGVTPGATPAGMTWDATPKLAGMATPTPKRQRSRWDETPATMGSATPMPGAT
PAAAFTPGVTPVGGVELATPTPGAINLRGPMTPEQYNLMRWERDIEERNRPLTDEELDAM
FPQEGYKILDPPASYVPIRTPARKLLATPTPMGTPLYAIPEENRGQQFDVPKEAPGGLPF
MKPEDYQYFGALLNEEDEEQLSPEEQKERKIMKLLLKVKNGTPPQRKTALRQLTDKAREF
GAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIEPLLIDED
YYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASALGIPALLP
FLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQKVRTITA
LSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDALYACYYT
KEVMYILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRNDILPEFFRNFWVRRMALD
RRNYKQLVDTTVEIANKVGVADIVGRVVEDLKDESEPYRRMVMETIEKVVANLGASDIDA
RLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKWRLNNKSA
KVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIG
MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRICFELLEM
LKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSP
FTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHR
QTAASAVKHMALGVAGLGCEDALVHLLNYVWPNIFETSPHVINAVMEAVEGMRVALGAAV
VLNYCLQGLFHPARKVREVYWKIYNSLYIGSQDALVAAYPGLEDGENNVYCRPELVMFI
NT seq 3780 nt   +upstreamnt  +downstreamnt
atggatttagagattgccaaaacccaggaggagaggaggaagttggagcagcagttggct
tctcttagttcagtgactttcgatactgatctttatggtagtaatgataaagcgggttat
gtgacttccatcccggttaatgaggacgatgagaaccttgaagccttggacaacgaggtt
gctcgtaagttggcttcttatacggccccgaagtctctgttaaaggagatgccaagaggt
ggcgaagaagatgatgatatagggtttaagaaaccgcagaggattatcgatagagaggat
gattataggaaacgtaggttgaatagggtgatatcgcctgagcggcatgatgcattcgct
gcgggtgagaagacgccggatccctctgtgaggacttatgcggaggtgatgagagaggag
gcgttgaagagggagagggaggagactttaagggctatagctaagaagaaggaagaagag
gaggctgctaaggcgtctggagagaaaccgaaggaatcagctgcagcgcctcagaagagg
aggaataggtgggatcagtcgcaggatgatggtggagaaaaaaaagcgaagacctcggat
tgggatttgcctgatacgacgcctggaaggtgggatgcgacaccaggccgggtgggggat
gccactcctggtgtggggagaaggaataggtgggatgagactccaactcctgggaggttg
gctgatttggatgcaactccagctggtggtgttacgcctggtgcaacgcctgccggaatg
acttgggatgcaactcctaaacttgctggaatggctacaccaactccaaaaaggcagcga
tcgcgatgggatgagaccccggcaacaatgggaagtgccactcctatgcccggagcaacc
cctgctgctgcatttactcccggtgtgacgcctgttggaggggttgagctggctacccca
acacccggggctatcaatttgcgtggcccaatgacgcctgagcagtataatttgatgagg
tgggaaagagatattgaggagaggaaccgcccattgactgatgaagaacttgatgccatg
tttccacaagagggatataagattctggaccctcctgcttcctatgtgccaattcgaaca
cctgcaaggaagttgctcgccacgccaactccgatgggaactcctctttatgccatccca
gaggagaatcgtggccagcagtttgatgttccaaaggaagcacctggtggcttgccattc
atgaagcctgaggattaccaatactttggggcattgttgaatgaggaagatgaggagcaa
ttgtctccagaagagcagaaagagcggaagattatgaagctcctactcaaggttaagaat
ggaacacctcctcaaaggaaaacagctttaaggcagcttactgataaggctcgtgagttc
ggtgcaggccccttgttcaaccgcattctgccactccttatgcagcctactctggaggac
caggagaggcatcttctggttaaggttattgacagagtgctttataaattggatgaattg
gttcgtccctatgtgcacaaaattcttgttgtgattgagccattgttgatcgatgaagat
tactatgcacgtgtagaaggtagagaaattatatccaatcttagtaaagcagctggtttg
gctactatgattgctgcaatgcgtccagatattgacaacatcgatgaatatgttaggaat
accactgcgagggcttttagtgttgttgcttctgcccttggaattcctgctcttcttcca
tttttgaaagctgtgtgtcagagtaaaaaatcatggcaagcacggcatactggaattaag
attgttcagcagattgctattctcattggatgcgctgttctaccacatcttaggtctctt
gtagaaattatagaacatggtcttaatgatgagaatcagaaggtgaggacaattaccgct
ttgtctctagctgcacttgctgaggctgcagccccgtatggtattgaaagcttcgactca
gtcttgaagccactgtggaagggtattaggtcgcaccgtggtaaggtgttggctgctttc
ctgaaggcaattggttttattattcctttgatggatgcattgtatgcctgctactataca
aaggaagtgatgtacattctaattcgagagttccaatcgcccgatgaagagatgaagaaa
attgttctcaaagtggtcaagcagtgtgtgagcactgagggagtagaggctgattatatc
cgtaacgatattctcccagaattctttaggaacttttgggttcgtagaatggctttagat
cgtagaaattacaagcaactcgtggacacaactgttgagatagcaaataaagtcggtgtt
gccgatatcgtaggtcgagttgttgaagatctcaaggatgaaagtgaaccttatagaaga
atggttatggaaacaatagagaaagttgttgcgaacttgggtgcatctgatatcgatgct
cgattagaagagctattgatcgatgggattctttatgccttccaagagcagaccagtgat
gatgctaacgtgatgcttaatgggtttggcgcagttgtcaattctcttggacagagagta
aaaccgtatcttccccagatttgtggtaccataaagtggcgattgaataacaagagcgcg
aaagtgaggcagcaagccgcagatcttatttcaaggatcgcagtcgtcatgaagcagtgc
caagaggaacagctcatgggccatcttggtgttgtcttatatgaatatttgggagaagaa
tacccagaagttctgggttcaattttgggagccttaaaggctattgtgaatgtcattggt
atgacaaagatgacgcctccgatcaaggatttgcttcccagattgacgccaattttgaag
aacaggcatgagaaagtgcaagagaactgcattgaccttgtcggtcgtattgccgatcgt
ggtgctgaatttgttccagcaagagaatggatgaggatctgctttgagttgcttgagatg
ctcaaagcccacaagaagggaatccgtcgtgctacggttaacacatttgggtacattgct
aaagccattgggccacaggatgttttagcgactttattgaacaatctaaaagtgcaggag
aggcagaatcgtgtttgcactactgtcgccattgctatagttgcagaaacctgttcgcct
tttaccgttctgcctgctctaatgaacgagtatcgtgtgccagagcttaatgtgcaaaac
ggtgtgttgaagtctctctctttcctttttgagtatattggcgaaatgggaaaggattac
atatacgctgtgacgccattgctcgaggatgctcttatggaccgagacctggtccacaga
caaactgcagcctctgctgtgaaacatatggctctaggggtagccggtttagggtgtgag
gatgccttagttcacttgctaaactacgtatggccgaacatattcgaaacatcaccacac
gtcataaacgccgtgatggaggccgtggaaggaatgagggtggcattgggcgcagcggtt
gtgctcaactactgcctgcaggggcttttccaccctgctcggaaagttcgagaagtatac
tggaaaatctataactcattgtacattggttctcaggatgctcttgttgcagcttatcca
ggactagaggatggagaaaacaatgtgtattgccggccggaactggtgatgttcatctga

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