Cucurbita pepo subsp. pepo (vegetable marrow): 111809954
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Entry
111809954 CDS
T05351
Name
(RefSeq) RNA polymerase sigma factor sigE, chloroplastic/mitochondrial-like
KO
K03093
RNA polymerase sigma-I factor
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpep03021
]
111809954
Transcription machinery [BR:
cpep03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
111809954
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r4
Sigma70_r2
GerE
Response_reg_2
Motif
Other DBs
NCBI-GeneID:
111809954
NCBI-ProteinID:
XP_023552213
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Position
LG14:complement(306434..310292)
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AA seq
509 aa
AA seq
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MGVVTVSSSAARTPFRLGGKFSNNISALKRPSIVAFKVDKHTNTTLVSPHEQVTLPVESN
NRNQKRTGKSSKSLKRVKAVLIDEATPCTSDVDYNEAAAKLENIFKLSPVTEDTDMENED
GRPKRGQQRRKKLGKRPCDGVVRNQTKRIKRLDLDKRIALKSNKEGKSAPSLSKQKETKS
EADEIDDLVRNYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALIQAQEELQKG
LGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKF
QDLCQAGVKGLITAIDRFEPKRRFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVE
IQRAKLELLCELHRLPTEQEVIAKVGISPERYLEVMRATKPVYSLHSRHSTTSEEFISGI
ADVEGTGGDNRRQSALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNIS
REMVRKHEVKALMKLKHPARVDYLRRYLI
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgggagttgtgaccgtttcaagctcggcagcacgaactccttttcggctaggtggaaaa
ttttccaataacatttctgcattgaaaagaccatcgattgtcgcttttaaagtagataag
cacacgaacactactttggtctcaccccacgagcaagtaaccctgcctgtggagagtaac
aacagaaaccagaaaagaacaggaaaaagtagcaaatctctaaagagagttaaagctgtc
ttgatcgatgaagctactccctgtacttcggatgtggattacaatgaggctgctgctaaa
cttgaaaacattttcaagcttagccctgtgacagaggatactgatatggaaaatgaagat
ggcagaccgaaaagaggacagcaaaggaggaaaaagttaggcaagagaccatgtgatggt
gtagtcaggaaccagactaagaggattaagcgactcgatctcgacaagaggatagcattg
aaaagtaacaaggaaggcaaatcagctccttcattaagtaaacaaaaagagaccaaaagt
gaagctgatgagattgatgatcttgtaagaaactactctgcttctactgatttggttagt
ttagactggaaaaagatgaagattcctccagttcttccttcatcagagcatacccgtttg
ttcaagttggttcaaccaatgaaggcacttattcaagcacaagaagaactgcagaaaggg
ttgggaagagaaccaactgaaggagaattggccaatgcgacaaatatgaatgtaattcaa
gtaaggagacagttggaggttggtcgtgctgcccgaaacaaactcatcaagcataatctc
cgccttgtattatttgtgatcaacaaatactttgaagattttgcaagtggcccaaaattt
caagacctttgtcaagcaggagtcaagggactcattacagcgattgatcgctttgagcct
aagaggagattccgcctatcaacttatgctttattttggataaggcatgctattattcgg
tcaatgactctctcaagcttcacacgtgtctcatttggactcgactcggtaagagttgaa
attcaaagagctaaacttgagttattatgtgagcttcatagattgccaacagagcaagag
gtaatcgcaaaagttggcatctcacctgagaggtacctagaagtaatgagggctacaaaa
ccagtttactctctccattctaggcactcaactacatcagaagagtttatcagtgggatc
gctgatgtagaaggtactggaggcgacaaccggaggcaatcagctcttctgaggcttgct
ctcgacgatgtgcttgattctcttaagccgaaagagagtttggtgatccgacaaagatac
ggtcttgatggcaaaggaaaccgaacattaggtgagatagccggaaatctaaatatttca
agggaaatggttcgaaagcatgaagtgaaagctctcatgaagctcaagcatcctgcaaga
gtggattaccttcgtcggtatttaatctga
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