Cucurbita pepo subsp. pepo (vegetable marrow): 111810078
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Entry
111810078 CDS
T05351
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 36a-like
KO
K14563
rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111810078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111810078
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Sno RNPs
Box C/D snoRNPs
111810078
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Gene cluster
GFIT
Motif
Pfam:
Fibrillarin
GCD14
Methyltransf_31
Methyltr_RsmB-F
PCMT
Motif
Other DBs
NCBI-GeneID:
111810078
NCBI-ProteinID:
XP_023552409
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Position
LG14:complement(500243..503796)
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AA seq
305 aa
AA seq
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MRPPRGRGGGGGFRGRGDGGRGGRGRGGGGGRGGGGGRGMASRGGGRGGGRGRGGGRGGG
MKGGSKVVVEPHRHEGIFIAKGKEDALVTKNMVSGESVYNEKRISVQNEDGTKVEYRVWN
PFRSKLAAAVLGGVDDIWIKPGARVLYLGAASGTTVSHVSDVVGPTGIVYAVEFSHRSGR
DLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGG
HFVISIKANCIDSTVPAEAVFASEVNKLKADQFKPTEQVTLEPFERDHACVVGIYRAPKK
QKAAA
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgagacctccacgaggccgcggtggtggtggtgggtttaggggcaggggtgatggagga
cgaggtggtagaggcagaggtggcggtggaggcagaggcggaggtggaggcaggggtatg
gcaagccgtggaggtggtcgcggaggtggaagaggccgtggtggaggaagaggaggtggt
atgaagggtggaagcaaagttgttgttgaacctcatagacacgagggtattttcatagcc
aagggaaaagaagatgctcttgtgacgaagaatatggtctctggagaatctgtctacaac
gagaagaggatatccgtacagaatgaagatggaacaaaagttgaataccgagtttggaac
ccattcaggtctaagttggctgcggccgttcttggtggtgttgatgacatttggattaaa
cctggtgcccgagtgttgtatcttggtgctgcttctggaacaactgtatctcatgtttca
gatgttgttggcccgactggtattgtgtatgccgttgaattctcccatagaagtggtaga
gatttagttaacatggcaaagaagcgtacaaatgttatacccatcattgaagatgctaga
cacccagccaaataccgaatgttggtcggtatggtagatgtgatattttcggatgttgct
cagccagatcaggcaagaattttagcacttaatgcatcatattttctcaaagctggtggt
cattttgttatatccatcaaggctaactgcatcgattcaaccgttcctgctgaagcagtg
tttgcaagtgaagtgaacaagctaaaagcagatcaattcaaacccactgagcaagtgact
cttgaaccatttgagcgagatcatgcttgtgtcgttggtatctatcgggcgccaaagaaa
cagaaggctgcagcttaa
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