Cucurbita pepo subsp. pepo (vegetable marrow): 111810088
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Entry
111810088 CDS
T05351
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111810088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111810088
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111810088
U7-dependent histone pre-mRNA processing factors
111810088
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
111810088
NCBI-ProteinID:
XP_023552428
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Position
LG14:complement(568081..576438)
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AA seq
738 aa
AA seq
DB search
MGTSVQVTPLCGVYNENPLSYLVSVDGFNFLIDCGWNDHFDPALLQPLSRVASTIDAVLI
SHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQFIARKQVSEFDLFTLDDID
SAFQVVTRLTYSQNHHLSGKGEGIVIAPHVAGHLLGGTLWKITKDGEDVIYAVDFNHRKE
RHLNGTILESFVRPAVLITDAYNALNNQPYRRQKDKEFGDTIQKTLRANGNVLLPVDTAG
RVLELIQILEWYWEEESLNFPIFFLTYVASSTIDYIKSFLEWMSDSIAKSFEHTRNNAFL
LKHVTLLINKSELDNAPDGPKVVLASMASLEAGYSHDIFVEWATDAKNLVLFSERGQFGT
LARMLQADPPPKAVKVTVSKRVPLTGDELVAYEEEQNRKKEEALKASLLKEEQSKASHGT
DNDIGDPMIIDASSNVAPDVVGSHGGAYRDIFIDGFVPPSTSVSPMFPFYENTSAWDDFG
EVINPDDYVIKDEDMDQSAPHGGVDVDGKLDETAANLILDMKPSKVVSNELTVQVKCSLH
YMDFEGRSDGRSIKSILSHVAPLKLVLVHGTAEATEHLKQHCLKNVCPHVYAPQIEETID
VTSDLCAYKVQLSEKLMSNVLFKKLGDYEISWLDADVGKTENGTLSLLPLSKAALPHKSV
LVGDLKMADFKQFLSSKGIQVEFAGGALRCGEYVTLRKVSDASQKGGGSGTQQVVIEGPL
CEDYYKIRELLYSQFYLL
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgggaacctctgttcaggtgacgcctctttgcggcgtgtacaatgaaaatcctttatcc
tatttggtctccgttgacggcttcaacttccttatcgactgtggttggaacgaccacttc
gatcctgctcttcttcaacctctatccagggtggcatcgacgattgatgcagttttgata
tcacatcctgatacacttcacctcggtgcccttccatatgccatgaaacaacttggactt
tctgctccagtatattccactgaacccgtgtatcgattgggccttcttacaatgtatgat
cagtttatagcgaggaagcaagtttcagagtttgatctatttacgctggatgatatcgat
tctgctttccaagttgtaaccaggctaacatactcccagaatcatcatctttcaggcaaa
ggagagggaatagttattgcacctcatgtggctgggcatttattggggggaaccctatgg
aagataactaaggatggagaagatgttatatatgctgttgattttaaccaccgcaaggaa
aggcatctgaatggaaccattctagagtcatttgtgcgacctgctgtattgataaccgat
gcttataatgctctaaataatcagccttacaggcgtcagaaggacaaagaatttggagat
actattcagaagaccttaagagctaatggaaatgtcttacttcctgttgatactgctggg
cgagtgttggagcttattcaaattttagaatggtactgggaagaggaaagtttaaatttt
cccattttctttttaacttacgtcgcatctagcacaattgattatatcaagagtttccta
gagtggatgagtgattcaatagcgaagtcttttgaacacacacggaacaacgcctttctt
ctcaagcatgtcacccttctaataaacaaaagtgaacttgataatgctccagatggacca
aaggttgttctagcatcaatggctagtttggaagctggttactcacatgacatttttgtt
gagtgggcaacggatgccaaaaatctcgtccttttttctgaaagaggccagtttggaact
ttggcccgcatgcttcaagcagatccacctcccaaagctgttaaggtaactgtgtctaag
agagtccctttgaccggagatgagctcgttgcttatgaagaagagcaaaacaggaaaaag
gaagaagctcttaaggctagtttgcttaaggaggaacaatctaaagcatcacatggaact
gataacgatattggtgatccaatgatcattgatgctagcagtaatgtagcaccagatgta
gttggttcacatggaggtgcataccgagacatatttattgatggttttgttcctccttca
acaagcgtttctccaatgtttcccttttatgaaaacacttccgcatgggatgattttggt
gaagtaatcaatcctgatgattatgtaattaaggatgaagacatggaccaatcagcgccg
catggtggtgtggacgtggatggaaaactagatgaaactgctgctaacttgattctggat
atgaagccttcaaaagttgtatctaacgaattgacagtccaagttaaatgctcattgcat
tacatggatttcgaaggtcgttcagatgggagatcaattaaatcaatactctcccacgtt
gctcccttgaagcttgtcttggtgcatggaactgcagaggccactgagcatcttaagcaa
cattgccttaaaaatgtctgtccccatgtctatgccccccaaattgaagaaacgattgat
gttacttctgatctgtgtgcatataaggtacaactttcagagaagctgatgagcaatgtg
ctgtttaagaagctaggagattatgaaatctcttggcttgatgctgacgtaggaaagacc
gagaatggaacgttgtctttacttcccctctcaaaggcggctttgcctcataaatctgtt
cttgttggggatctaaaaatggctgacttcaaacaatttctttccagcaagggaatacag
gttgaatttgctgggggtgctttgagatgtggcgagtatgttaccctacgcaaggtttca
gatgcaagtcagaagggtggtggttctggtactcaacaagttgtcatcgaagggccctta
tgtgaagattattacaaaattcgggagcttttgtattcacaattttatttgctatag
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