KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111810390
Entry
111810390         CDS       T05351                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cpep03009]
    111810390
Ribosome biogenesis [BR:cpep03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    111810390
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 WD40_WDHD1_1st Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_Prp19 WD40_CDC20-Fz NBCH_WD40 WDR55 Beta-prop_Vps41 EIF3I Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_WDR41 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_IFT140_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_ACSF4 WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th Beta-prop_VPS8 Beta-prop_NOL10_N Beta-prop_DCAF4 WD40_Gbeta Beta-prop_SPT8 PAC11 Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_NWD2_C WD40_RFWD3 PEP5_VPS11_N WD40_MABP1-WDR62_1st Beta-prop_WDR11_1st TilS_SCL
Other DBs
NCBI-GeneID: 111810390
NCBI-ProteinID: XP_023552864
LinkDB
Position
LG14:2182835..2184154
AA seq 439 aa
MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA
SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT
SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD
GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA
VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV
RRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
ELILKEAKAGYNQREEIQR
NT seq 1320 nt   +upstreamnt  +downstreamnt
atgccattttctccacaagaagttgtcctggccagctctcctgatggccccattgtggcc
tatgatgcctccacaggcacccctctagccagtttcaatgatagccgttcgcctcgccgt
ggtatcacccgagccgggaggagttccatcgccgtctcccatatctgcccaatcactgct
tcgggttcaatccacatttataattggtggaattcatctgccttccagagtatcactgta
cctgaacctgttgctcctctcacagccactcctgatgggttttatctgtttgctggtggc
ctttcaggctgcattcatacgctctctcttccatctggggatgttctcaactctttaccc
gcacacaggaaatcagtttcttgccttgaacttagcgctgatgggtcacttctcatatca
ggtggggatgatggcacgattgttgtcatcccaatctttcaacttgttcaagccaaacca
caggaaaatgcgaccaaacacattctacatcagttttcagcacataatgattcagtgact
tccatttactctgtcatggggatgtccagttcccaaatagtctcaagctcaatggatggc
agatgcaagttctggagcttgctctcaggaacagtcttgcacaccgtggtgttcccttgt
gtcattttcagtgtggtcttagatccatcagaaacagagtttttcgctgcaggaactgat
gggttggtgtacaagggctcattgagacataacatcaaacaccttatacgcacagattct
gaactaactccaccagcatccgacgacttggcgtacaggtgctcattgaggcataaaaac
aaacaccttatgggcacaagctctgaactaatttcatggtcgcctaagcacaacgctgca
gttgtatctatagtcataatcaacgaaggaaataacttaatatctgcagcagaagatggg
aacatctgggtctggcaagtgaacaaggggcaggtgataatgaccctcgaaaatgagatg
ggaagcataagcgatttggtgattgccacagaaaaaaggcatgaaaaagaacgaaatgtc
agaaggggcagccatggaagagcaatgaaaagtgagagctctagattacccagtcccatg
ttggggttattgataaatcaaacagctgagatgcaaggcgcggtggcggcgggcggaagc
gacgtgagaagagccattgagttgctggaatctgccatcgctatgtatgagaagatgttg
gagctaatcttgaaggaagccaaagcaggctacaatcaaagagaagaaatacaaagatga

DBGET integrated database retrieval system