Cucurbita pepo subsp. pepo (vegetable marrow): 111810390
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Entry
111810390 CDS
T05351
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
KO
K14829
pre-rRNA-processing protein IPI3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpep03009
]
111810390
Ribosome biogenesis [BR:
cpep03009
]
Eukaryotic type
Pre-60S particles
5-FMC complex
111810390
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
NBCH_WD40
WDR55
Beta-prop_Vps41
EIF3I
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_NWD2_C
PQQ
PEP5_VPS11_N
Beta-prop_WDR11_1st
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
111810390
NCBI-ProteinID:
XP_023552864
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Position
LG14:2182835..2184154
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AA seq
439 aa
AA seq
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MPFSPQEVVLASSPDGPIVAYDASTGTPLASFNDSRSPRRGITRAGRSSIAVSHICPITA
SGSIHIYNWWNSSAFQSITVPEPVAPLTATPDGFYLFAGGLSGCIHTLSLPSGDVLNSLP
AHRKSVSCLELSADGSLLISGGDDGTIVVIPIFQLVQAKPQENATKHILHQFSAHNDSVT
SIYSVMGMSSSQIVSSSMDGRCKFWSLLSGTVLHTVVFPCVIFSVVLDPSETEFFAAGTD
GLVYKGSLRHNIKHLIRTDSELTPPASDDLAYRCSLRHKNKHLMGTSSELISWSPKHNAA
VVSIVIINEGNNLISAAEDGNIWVWQVNKGQVIMTLENEMGSISDLVIATEKRHEKERNV
RRGSHGRAMKSESSRLPSPMLGLLINQTAEMQGAVAAGGSDVRRAIELLESAIAMYEKML
ELILKEAKAGYNQREEIQR
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgccattttctccacaagaagttgtcctggccagctctcctgatggccccattgtggcc
tatgatgcctccacaggcacccctctagccagtttcaatgatagccgttcgcctcgccgt
ggtatcacccgagccgggaggagttccatcgccgtctcccatatctgcccaatcactgct
tcgggttcaatccacatttataattggtggaattcatctgccttccagagtatcactgta
cctgaacctgttgctcctctcacagccactcctgatgggttttatctgtttgctggtggc
ctttcaggctgcattcatacgctctctcttccatctggggatgttctcaactctttaccc
gcacacaggaaatcagtttcttgccttgaacttagcgctgatgggtcacttctcatatca
ggtggggatgatggcacgattgttgtcatcccaatctttcaacttgttcaagccaaacca
caggaaaatgcgaccaaacacattctacatcagttttcagcacataatgattcagtgact
tccatttactctgtcatggggatgtccagttcccaaatagtctcaagctcaatggatggc
agatgcaagttctggagcttgctctcaggaacagtcttgcacaccgtggtgttcccttgt
gtcattttcagtgtggtcttagatccatcagaaacagagtttttcgctgcaggaactgat
gggttggtgtacaagggctcattgagacataacatcaaacaccttatacgcacagattct
gaactaactccaccagcatccgacgacttggcgtacaggtgctcattgaggcataaaaac
aaacaccttatgggcacaagctctgaactaatttcatggtcgcctaagcacaacgctgca
gttgtatctatagtcataatcaacgaaggaaataacttaatatctgcagcagaagatggg
aacatctgggtctggcaagtgaacaaggggcaggtgataatgaccctcgaaaatgagatg
ggaagcataagcgatttggtgattgccacagaaaaaaggcatgaaaaagaacgaaatgtc
agaaggggcagccatggaagagcaatgaaaagtgagagctctagattacccagtcccatg
ttggggttattgataaatcaaacagctgagatgcaaggcgcggtggcggcgggcggaagc
gacgtgagaagagccattgagttgctggaatctgccatcgctatgtatgagaagatgttg
gagctaatcttgaaggaagccaaagcaggctacaatcaaagagaagaaatacaaagatga
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