Cucurbita pepo subsp. pepo (vegetable marrow): 111810596
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Entry
111810596 CDS
T05351
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03030
DNA replication
cpep03420
Nucleotide excision repair
cpep03430
Mismatch repair
cpep03440
Homologous recombination
cpep03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
111810596
03420 Nucleotide excision repair
111810596
03430 Mismatch repair
111810596
03440 Homologous recombination
111810596
03460 Fanconi anemia pathway
111810596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpep03000
]
111810596
03032 DNA replication proteins [BR:
cpep03032
]
111810596
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111810596
Transcription factors [BR:
cpep03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
111810596
DNA replication proteins [BR:
cpep03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
111810596
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
111810596
MMR (mismatch excision repair)
111810596
DSBR (double strand breaks repair)
HR (homologous recombination)
111810596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
zf-CCHC
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
111810596
NCBI-ProteinID:
XP_023553094
LinkDB
All DBs
Position
LG14:complement(8460582..8463799)
Genome browser
AA seq
832 aa
AA seq
DB search
MVASMAPFKLTEGAVMVICKRESSAETFQPVVQVIDLKLVNTTQQSGSERYRLLLSDGTH
YQQGMLGTQLNGLVKSGKLQKGSIVQLRQYVCNPVQERLIIIVIELDVIKEMCDFIGEPV
PATRSVSAAFSGNPQSSMGASSGNGIVGNVNVSAASFEQPKVNQSQVPHVGSHFNTPNSG
TRFNGSSPVTGSYGDQKMAYHNNGSDIPRPPLNASHAPPQPIHQQPPSMYSNRGGPVAKN
EAPPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYGGEIRATC
FNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLNNDFEIFLENTSTIQPCFEDDQSIP
HQQFHFHHISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVE
LTLWGNFCQAEGQKLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPDFPEAR
TLRGWFEKEGRSTPSVSISREVATVGRTDARKTISQIKDERLGTSEKPDWITVSATVSFI
KVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLT
WVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKVKEETFSDEQ
RVKSTVMKAESINFSTESRFLLDLMEKLRAGNTIQNPGVFRPGSENIGGGQFVSPIRNST
NNVGREYGTSNRGVQYGDHHNSSRPIPSTLHNSRTYCNSCGGSGHSSMNCPSIISSPAPS
VGGGIYLNRVSGSSGRDSGECFKCHQTGHWGRDCPGLATFPPAYGNSGFTAR
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggtagcatcaatggcgccttttaagctgacggaaggagcagtgatggtgatatgcaag
cgagaatcgtcggcagagacgttccagccggttgtacaagtaattgacttgaaattggtt
aacactacgcaacaatcgggcagcgagaggtacagattgttgctttctgatggaactcat
taccagcaaggaatgctaggcactcagctcaatggattggttaagtccgggaagttacag
aaaggttccatcgttcaactgcggcagtatgtttgtaatcccgttcaagaacgcctaatt
ataatcgtcattgagttggatgtgataaaggaaatgtgtgattttattggcgagcctgtt
ccagcaacaagatcagtatcagccgcatttagtggaaacccccaatcctctatgggggct
tcatccggcaacggaatagttggtaatgtgaatgtatctgctgcgtcttttgaacagcct
aaagtgaatcaatcacaagtaccgcatgtgggatctcattttaacacccctaattctgga
acaaggtttaacggttcatctcctgtaactgggtcatatggtgatcagaagatggcatac
cacaacaatggatcagatattcccaggccacctctaaatgcttctcatgcccctcctcag
cctatacatcagcagccaccttcaatgtacagtaacaggggaggaccggtagcaaaaaat
gaagctcccccaaggataatgcctattactgctctgaacccttaccaaggaaggtggaca
ataaaggctcgagttacttcgaaaggagaacttagacactacaataatcctcgtggagat
gggaaagtgttttcatttgatctacttgatgcatacggtggagaaatacgagcaacatgc
ttcaatacggtagctgatcagttttacaaccagattgaatctggtaaagtatacttcatt
tctaaaggaagcttgaaacctgcacaaaagaactataaccatctcaataatgactttgaa
atatttcttgaaaacacatcaacaatccaaccttgctttgaggatgaccaatcaatcccc
catcagcagtttcatttccatcacattagtgagattgagggcatggatagcaacagtgtt
gtagatgtaattggtgttgtttcttccattaatcctgcaacgtctctcatgagaaaaaat
ggtactgagactcagaagagatcccttcagttgaaagatatgtctggccgaagtgttgaa
ttgactctttggggaaacttttgtcaagcagaagggcaaaaattgcaaaacatgtgcgac
tcggggttgttcccagttttggctgtgaaatctggtagagtgagtgacttcaatgggaag
gcggtgggaaccatttcaacaagtcagcttttcgtagagccagatttccccgaggctcgt
acattaagagggtggttcgaaaaggaaggaaggagtactccttctgtctccatatccagg
gaagttgctaccgtgggcaggacagatgcccgtaagaccatatctcaaataaaagatgag
aggttaggaacctctgagaagccagattggatcactgttagtgcaactgtttcattcatt
aaggttgataatttctgttacacagcatgtcctatcatgatcggggatcgtcaatgcagc
aaaaaggttacaaataacggagatggaaaatggagatgcgaccggtgtgatcagtctgtc
gacgaatgtgactacaggtacatattgcagctgcaaatacaggatcatactggcttaact
tgggtgactgcatttcaagaaggcggcgaggagatcatgggcatacctgcaaaaagattg
tattatttgaaatacgaagagcaagatgatgaaaagtttgcagaaatcatccgtaaggtt
ctttttacaaaatttattatgaagttgaaagtaaaggaagagacttttagtgatgaacag
agagtgaaatcaactgtcatgaaagcagaaagcattaacttttcgaccgagtccaggttt
cttctagatttgatggaaaagctcagggcagggaacaccatacaaaatcctggagttttt
cgccccggatcggagaatatagggggtggacagttcgtgtcgcccattcgaaatagtacc
aataatgttggcagagaatatggtacatcgaaccgaggtgttcagtatggggaccatcac
aacagttctaggcctattccatccacactgcataactcgcgcacgtactgcaacagctgt
gggggatcgggtcacagctcaatgaactgtccgagtatcatcagcagccctgcgccatcc
gtcggaggagggatatacttaaatcgagtttcaggctcgtctggtcgtgactctggtgaa
tgcttcaaatgccatcaaaccgggcactggggtagggattgccctggtttggctactttc
cctccagcttatggtaacagtggcttcacggctaggtga
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