Cucurbita pepo subsp. pepo (vegetable marrow): 111810634
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Entry
111810634 CDS
T05351
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03013
Nucleocytoplasmic transport
cpep03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111810634
03015 mRNA surveillance pathway
111810634
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111810634
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111810634
5.6.2.5 RNA 5'-3' helicase
111810634
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111810634
mRNA cycle factors
Common to processing body (P body) and stress granule
111810634
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
UvrD-helicase
nSTAND3
ATPase
SRP54
PhoH
AAA_16
AAA_22
Ribosomal_S13_N
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
111810634
NCBI-ProteinID:
XP_023553136
LinkDB
All DBs
Position
LG14:7530966..7544941
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AA seq
1269 aa
AA seq
DB search
MDSQQNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHT
DRGGGSDHQSDASPVSAAPGSATKGRTGGGSGNSGGNNQMVDALAAGMSGLTFEDTGDDD
NYEFGKGNFTEHACRYCGISNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKE
VCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLS
QWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDD
EPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVF
PKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHG
FSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGL
PELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD
QLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGE
LSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPEC
LIPLVLGAKQAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHP
SLSEFPSNSFYEGTLQNGVTINERQSAGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLN
RTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASV
DSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWN
SLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDNFGPVAPSG
PNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPHPYGIPTRGAVH
GPVGAVPHVPQPGSRGFGAGRGNVGAPIGSQLPNQQGSQQNIGNLGSTFNFPGLESPNSQ
PSVGGPLSQLGFVNNMPVQPPTQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQ
ASQTGYPIDYVSQGAQGGFPGSFLNQNSQSGYNRFGTGNDFMSQDYMNHGSQGLFTQVGF
SDPSLDEASQSHYNVTNTNSLQSQGMMNSLYSQPFAHYNTQPSTQQAPPQQQQPQQGQSS
QNQKIHFSG
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagcagaacaatttgtttgaaacggcatctcaacctgatacggggaacgac
gcctacacatttcttgagttcaacacacagggagaagacttcgattatcctgaatttcgc
gaccctattaggtcccctgtagcgtggccgactccttccgattcgttagcggatcatacg
gaccgtggtggtgggtcggatcatcagtctgatgcatctccggtttcggctgcaccggga
agtgccacgaagggccggactggtggaggttcagggaatagcggcggtaataatcaaatg
gttgacgcattggctgccgggatgagtgggttgacgtttgaggatacgggggatgatgat
aattatgagtttgggaagggaaatttcacggagcatgcttgtaggtattgtgggatttcg
aatccggcttgcgttgtgaggtgtaacgtgccgtcatgccgtaagtggttctgcaattcg
cgagggaacacgtctgggtcccatattgtgaatcacctggtccgggcaaaacataaagaa
gtttgtcttcacaaagacagtcctctgggagaaacaattctcgagtgttacaattgtggg
tgccgaaatgtattcctccttggatttatttctgcaaagacagaaagtgtggttgttcta
ctctgtagggaaccttgcttgagtgtaaatgctcttaaggatatgaattgggacttgagt
cagtggtgccctctaatcgacgataggtgctttttgcagtggctggttaagattccttct
gagcaagagcagttgagggcacggcaaattagtgcccaacaaataaataaaattgaggaa
ctttggaagacaaacccagatgcatctcttgaagatcttgaaaaacctggtgtggatgat
gaaccacagcccgtagcattaaaatatgaagatgcttatcagtatcaaaatgtatttgca
cctcttatcaagcttgaagccgactacgataaaatgatgaaagaatctcaaagcaaggat
aatgtgactgtacgttgggacattggtcttaacaagaagagaatagcttattttgtcttt
ccaaaggaggacaatgaattgcgtcttgtacccggagatgagttgaggttacgctattct
ggtgatgcagctcatccagcttggcattctgttggacatgtgatcaagctaactgcacag
gaagaggttgcactcgagctacgtgctagccagggggttccagttgatgtggtccatggt
tttagtgttgattttgtgtggaagagtactagtttcgaccgaatgcagggagctatgaag
acatttgctgttgatgagaccagtgttagtggttatatctaccatcacttattaggacac
gaagtggaggttcagatggttcgcaatacacttccacgtcgttttggtgctcctggtctc
ccagaactcaatgcatctcaagtttttgctgttaaaagtgttcttcagaagccaataagc
ttgattcagggccccccgggtactgggaaaactgtaacttctgctgccatagtgtatcat
atggccaaacaaggccaagggcaggtgctggtctgtgcccctagtaatgtggctgtggac
caactggcagagaagataagtgcaactgggttaaaggttgttaggctatgtgcaaaatca
agagaagctgtaagttctcctgtggaacacttgacccttcactatcaggttcgacatctt
gacacatcggaaagaagtgaacttcataagttgcaacaattgaaagatgaacaaggggag
ctgtctagcagtgatgagaaaaaatataaagcccttaagagagcaacagagagggaaatt
tcccagagtgcagatgttatttgttgcacatgtgtcggtgctggagatcctcgcctgtca
aattttagatttcgccaggttcttattgatgagtctactcaggcaacagaacctgaatgt
cttattcctcttgttcttggagcaaagcaggctgttcttgttggtgaccattgccaactg
ggacctgtcattatgtgcaaaaaagcagcacgtgcagggctggctcaatccctttttgaa
cgtcttgttcttcttggtgtgaagccaattagattgcaggtccaatatcgtatgcaccca
tccctttctgaatttccttccaacagcttctatgagggcacactacaaaatggagttaca
atcaatgaaaggcaatcggcaggcatcgactttccatggccagttcccaaccgtccaatg
ttcttctatgttcagatgggacaagaggagataagtgccagtggaacttcctacctaaat
aggaccgaggcagcaaatgtagaaaaaattgtgaccactttcttaagaagtggtgtagtc
cctagtcagattggagttattacaccatatgagggtcaacgagcttacattgtgaactat
atgtcaagaaatggtgctctcagacagcaactttacaaggaaattgaggttgcaagtgtg
gattcatttcaaggaagggaaaaagattacatcatattgtcatgtgtaaggagtaacgaa
catcagggcattggattccttaacgatcctcgcaggctcaatgtggctttaacacgagct
cgatatggtattgtcattcttggaaacccaaaggttttgagtaaacaacctctgtggaat
agcttgttgacacattacaaggaacatgaatgcttggttgagggtcccttgaataacttg
aaacaaagcatgatacagtttcagaagcctaaaaagatatacaatgatcggcgtcttttc
tttgctggtgggcctggagttgtccccaatgataattttgggcctgttgccccatctggt
cctaatgccgatagaagaagtagtcgtggtagaggttcgtactttcctcctcacctgccg
aatggtgcgcaaaagcctggagtgcatgcatctggttatcccatgccacgagttcctctt
ccctcgtttcatggtggtcccccgcatccatatggaattccaactcgtggagctgtacat
ggaccagttggtgctgttcctcatgttcctcaaccaggaagtagaggttttggggcaggg
cggggaaatgttggtgctcctattggtagtcagcttccaaatcagcaaggctctcaacaa
aatattggaaatcttggctccacttttaactttcctggtttggagagtcccaatagccaa
ccatccgtgggtggtccgttgtctcaacttgggtttgttaacaatatgcctgttcagccg
cctactcaaacatttcgtgatggatactccatgggaggaatttctcaggacttcttgggc
gatgactttaaaagccagggatcacatgttccatacaatgttactgatttctccactcag
gcctctcaaactggatatcccattgattatgttagtcaaggagcacagggtggctttcca
gggagcttcctgaaccagaattctcaatctggatataaccgtttcggaacaggaaatgat
ttcatgtcgcaggactacatgaaccatggttcacaaggtttatttactcaagttggtttc
agcgatccctcactagatgaagcctcccaaagtcactataacgtgacaaatacaaactca
ctacagtctcagggcatgatgaattctctctactcccagccctttgcacattacaataca
cagccttcgacccagcaggccccaccacagcagcagcagcctcagcagggccagagctct
caaaatcagaaaattcactttagtggttga
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integrated database retrieval system
