Cucurbita pepo subsp. pepo (vegetable marrow): 111810752
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Entry
111810752 CDS
T05351
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111810752
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111810752
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111810752
mRNA degradation factors
5'-3' decay
Decapping complex
111810752
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
PEP5_VPS11_N
DUF445
Motif
Other DBs
NCBI-GeneID:
111810752
NCBI-ProteinID:
XP_023553292
LinkDB
All DBs
Position
LG14:complement(6286549..6295135)
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AA seq
1413 aa
AA seq
DB search
MASTGNPNPNPTNPPFDVQKFFKPTISNPPPTSQNPTLLNSSPFPPPSSSYPPPTGPFSY
PLQNAPFHHPYHSPHLPNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNVGVPQNNPA
QSSGARIMAMIRAPGSNLEQLPLPPAPLASMPSPSSGIPESSAPPNIPIMTTIPMIQGVN
PGISPTGPVRMPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLG
RQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGR
VYVWKISEGPDEETKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKSVLR
IDTTKVGKGESFSAEAPIKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGT
IKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNWEVKIWSSASEEG
WLLPSDAESWKCTQTLELKSSAESQVEEAFFNQIVALSPAGLLLLANAKKNAIYAIHLDY
GLNPASTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLP
PPLDNVVLEKADSNVSQDSAGVEGLAALFPSGSKPTDTPFTSSTPRGSVLVNGSESATAE
RYPASTTSQDAASIANTESKPATLSPVASNTDIVSTASPPLPLSPRLSRNLSGFRSPVVS
FEPITAVSDHAGDRRGNDFSVNRQMDAIHTNLSEVSSLDDESRIIEEKIAREDLSNVLNP
PIVFKHPTHLITPSEILMAVSSSETTNVTEGKSEGETNIQDVVVNNDVEDTEMEVKEVEM
KSPQNGEYGRRGEPQNLSPENKEKIFCSQASDLGMEVARECSTLSSETYIIEESPQVDAN
TINSEEDSQTGEGDRTSAKDVSEKVSESSISTTLQIPTPNTKGKKNKGKNSQALGLVSQS
SSAFNSNESSTEPCGSSSLLPPEAAFPPLLAIQDTLNQIMSTQKEMQKQMQTTLAVPVTK
EGKRLEAALGRSMEKALKANADALLARIQEESAKNEKLLRDNTQKISSLVANFVNKDLPA
FLEKALKKEMSTIGPAVARTITPAIEKTISSAIIDSFQRGVGDKAVSQLEKAVNSKLEAT
VARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKAMFEQVDSTFQKGLVEHSAAAQ
QHFDSSHSSLALALRDAINSASTMAQSLSGELAEGQRKLIALATAGANASSMNPLVTQLS
NGPLGALHEKVEVPLDPTKELSRLLSERKYEEAFTTALQRSDVNIVSWLCSQVDLRAILA
NPLALSQGVLLSLLQQLACDINKDRSRKIGWMTDVAAAVNPTDPMIAMHVRPIFEQVYQI
LNHQRTLSTISPVELTGIRIIMHVVNSMLVTCK
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggcttccactgggaatccaaatccaaatccaacgaatccaccatttgatgtccagaaa
ttctttaaacccaccatttccaaccctccgccgacctcccaaaaccctacccttttgaat
tcatcgccatttccgcctccttcttcctcttaccctcctcccactggtcctttctcttac
ccacttcagaacgccccatttcatcatccctatcattctcctcatcttcccaatcaagtt
ccgtactctcaggaccagttctctaatcttcaccatcagcgctctctttcttatcccacg
ccgccgcttcagccttctcctcctccggtcaacgtcggcgtcccgcagaacaatccggcg
cagagctctggtgctcggataatggcgatgattagagcccctggttctaatctcgaacaa
ctccctcttccccctgctccattggcttcgatgccgtctccttcctcgggcattcctgaa
tcttcagcgcctcctaatattcccatcatgactaccattcccatgatacagggggttaat
cctggcatttctcctaccgggccggttcgaatgccgagtagtaagcttcctaaaggccgg
catttgatcggtgatcatgtggtgtatgatgtgaatgttaggttgcaaggagagatccag
ccacagctcgaagtgacgcctattaccaaatatggttcagatcctcagcttgtgctgggg
cgtcaaattgcggtcaacaagacatatatatgctatggattgaaacaggggaacattcga
gttcttaatatcaataccgcgctaagatctttgtttcgaggccatgaaaagagggtcact
gacatggcattctttgcggaagatgttcatcttttggctagtgttgacgtaggtggacga
gtttatgtttggaagatttctgagggccctgatgaagaaactaagccacaaatcactggg
aaagttgttatctcccttcatatggaaggaggagagggggaaattgttcatccacgagtt
tgctggcattgtcacaaacaggaagttttggttgttggatttgggaagtctgttctgagg
attgacacaacaaaagttgggaagggtgaaagcttttctgccgaagctcctatcaaattt
tctcttgataagttgattgatggcgtccagcttgttggtaagcatgatggagaagtgact
gagttgtccatgtgccagtggatgacttctcgattggtttctgcttctatggatggaacg
atcaaaatctgggaagatcgcaaggcatcacctttgctggttttgagacctcatgacggc
caaccagttaatgcagctactttcttgactgctcctaatcgaccagatcacattatactc
ataacagctgggcctctaaattgggaagtgaaaatatggtcatctgcaagcgaggaaggt
tggctgcttcctagtgatgccgaatcatggaaatgcacccagaccctggaactgaagagt
tcagctgaaagtcaagttgaagaggctttctttaatcaaattgtagcattatctccagct
ggccttcttttgcttgctaatgctaagaagaatgctatatatgcaattcacttagattat
ggtcttaatccagcctcgacacggatggattatatagcagagtttactgtcacgatgccg
attttaagttttactggaacgagtgaaatattagaccgtctaacacatattgtccaggtc
tattgcgtacaaacacaagcaatacagcagtatgctttagacttatctcagtgcttaccc
ccaccattggacaatgtggtgttagaaaaggcagattctaatgtttcacaagattctgct
ggggttgaaggactggctgccttgtttccatctgggagcaagccaactgacacacccttc
actagttccacacccaggggttcagtgctagtcaatggctctgaaagtgctactgcagaa
agatatcctgcaagcaccacttctcaggatgccgcatccattgcaaatacggaatctaaa
cctgctacactgtcacctgtagctagtaacacagacattgtctctactgcatcacctcct
cttcctttgagcccacgcttgtctagaaatctgtctggttttagaagtccagtggtttcc
tttgagcctattactgcagttagtgatcatgctggtgaccgacgtggtaatgacttttca
gtcaatcgacaaatggatgccattcacacaaatttgtcggaagtgtcttccctggatgat
gagtccagaatcattgaggagaaaattgcacgggaagatctgtctaatgtcctaaatcct
ccgattgtgtttaagcatccaactcatcttattaccccctctgagatactgatggctgtt
tcttcctctgaaacaacgaatgtcactgaaggtaagagtgagggagagacaaatatccag
gacgtagtggttaacaatgacgttgaagatacagagatggaggttaaagaggtagaaatg
aagtctcctcagaatggtgaatatggtcgtagaggtgagcctcaaaacctttctccggag
aacaaggaaaaaattttctgctcacaagcttcagatcttggtatggaagtggctcgagag
tgtagtacactatcatctgaaacttatatcattgaggaatctccacaagttgatgctaat
acaataaactcagaggaagactcccaaactggtgagggtgatagaacatctgccaaagat
gtgtcggaaaaggtttcggaatcatctatatcaacaactcttcaaattccaactcctaat
acaaaggggaaaaagaacaaggggaaaaattctcaagccttaggcttggtttcccaatct
tccagtgctttcaattctaatgaatcttccactgaaccttgcggtagttcaagccttctt
ccacctgaagctgcttttcctcctttactggccattcaagatacgttgaatcagataatg
agcactcagaaagaaatgcaaaagcagatgcagacgacacttgcagttccagttactaaa
gaaggtaaaaggctggaggcagctcttggacggagcatggaaaaggccttgaaagcgaat
gctgatgcattattggcccggattcaggaagagagtgctaaaaatgagaaattattacgt
gataatactcaaaagatatctagtcttgttgcaaactttgtaaacaaggacttgcctgcc
tttttagagaaagctctgaagaaggaaatgtctaccattggacctgctgtggctcgcaca
ataacaccagctattgagaaaacaatttcttctgccatcattgattccttccagagagga
gtaggcgacaaggcagtaagtcaactagagaaagctgtcaactcaaagcttgaagcaact
gttgctaggcaaatccaagcacagtttcaaacctccggcaagcaagctcttcaggatgca
ctaaaatctagtttcgaagcatcagtaattcctgcctttgaaatgtcgtgcaaagccatg
tttgagcaagtagattctaccttccagaaaggactggttgaacactcagctgcagctcag
cagcacttcgactcctcacattcttcattggcacttgctttgagggatgcaataaattca
gcatcgacaatggcacagtccttgagtggagaattggctgaaggccaaagaaaactgata
gccctagcaactgctggagcaaatgctagttcaatgaatcctttggttacccaactaagc
aatggaccattgggtgctctccatgagaaggttgaggttcctttggatcctaccaaagaa
ctgtcgagactgttatctgaaaggaaatatgaggaagctttcaccactgctttacagaga
agtgatgtgaatattgtctcttggttatgttctcaggttgaccttagggccattctggca
aatccccttgctttgagtcaaggagtactgctgtcacttctgcaacaattagcctgtgat
atcaacaaggatagatcccggaaaattggatggatgacagacgtggctgcagccgttaat
cccacagatccaatgatagcaatgcacgtacgacccatctttgaacaggtgtatcagatt
ttgaaccatcaacggaccttgtcaacgatctctcccgttgagctcactggcattcgtatt
ataatgcatgttgtcaactccatgctggtaacttgtaaatga
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integrated database retrieval system
