Cucurbita pepo subsp. pepo (vegetable marrow): 111810801
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Entry
111810801 CDS
T05351
Name
(RefSeq) serine/arginine-rich splicing factor RS40-like isoform X1
KO
K12893
serine/arginine-rich splicing factor 4/5/6
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111810801
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpep03041
]
111810801
Spliceosome [BR:
cpep03041
]
Common components
Common spliceosomal components
SR proteins
111810801
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_5
RNA_bind
Nup35_RRM_2
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
111810801
NCBI-ProteinID:
XP_023553364
LinkDB
All DBs
Position
LG14:5718163..5723014
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AA seq
387 aa
AA seq
DB search
MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSGFAFIYMEDEREAEDAIRALDRREF
GRKGRRLRVEWTKQERGIRRPGGGRGGGDSRRSSTNTKPSKTLFVINFDPYHTRTRDLER
HFDPYGKILNVRIRRNFAFVQYELQEDATRALEITNMSKLMDRVISVEYAVRDDDEKRNG
YSPDRTRDRSPDRKRRSPSPYRRERGSPDYGNGVSRSPYRKVRASPDYGSRRSPSPYQRV
RERGSPEYGRGRSPNQSPYRRERERERSSDHARAPSHSPYRRERERERSSDHARAPSHSP
PAPHQRERANGERAHSGIHSPYGRERGSPSEERRTSYSPRDRERSNPDNGHDQRPKTIAE
PGDSPSYGGTQSPKHRGYKSRSPEAEE
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatcttttgtggaaactttgagtatgatgctcgacagcctgatctggaaaga
ctttttagtcgatatgggaaagttgatagagtagatatgaaatctggttttgcttttatc
tacatggaggatgagagagaggctgaagacgctatccgtgcacttgatcggagagaattt
ggccgaaagggtcgcagactacgtgttgagtggaccaaacaagagcgtggcattagaaga
ccaggtggtggcagaggtggaggagattcaaggagatcctctactaatacaaaaccttcc
aagactttatttgttattaactttgacccatatcatactaggacaagggatttggagagg
cacttcgatccttatggtaagatattgaacgtaaggattcgaaggaattttgcatttgtc
cagtatgaattgcaggaggatgccactagagcattggagattacaaacatgagcaaattg
atggatcgagtgatttcagtggaatacgctgttcgagatgacgacgagaaaagaaatggg
tatagtccagataggactcgtgataggtctcccgatagaaaacggcgatccccaagtccc
tatagaagagagcgaggaagccctgattatggcaatggtgttagccgcagtccatatagg
aaagtcagggctagtcctgattatggaagtcgtcgtagtccaagcccttaccagagagtg
agggagaggggttctcctgaatatggtcgtggtcgtagtcccaatcagagtccttatagg
agagagcgagagcgagagagatcaagtgaccatgcgagggcccctagccatagtccttat
aggagagagcgggagcgagagagatcaagtgaccatgctagggcccctagccatagtcct
cctgctccccatcagagggaaagagcaaatggtgagcgagcccacagcggaattcacagt
ccttacgggagagagaggggcagtcctagcgaagaacgtcgaactagctatagtcctcgt
gatagagagaggtcaaacccggacaatggtcatgatcagcggccaaaaacaatagccgaa
ccaggggatagcccgagttatggtgggactcagagcccgaagcatcggggctataagagc
cgttcacctgaagcagaggaatga
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