Cucurbita pepo subsp. pepo (vegetable marrow): 111810887
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Entry
111810887 CDS
T05351
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04120
Ubiquitin mediated proteolysis
cpep04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111810887
04120 Ubiquitin mediated proteolysis
111810887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cpep04121
]
111810887
Enzymes [BR:
cpep01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111810887
Ubiquitin system [BR:
cpep04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
111810887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_11
zf-RING_16
zf-RING_5
FlxA
Motif
Other DBs
NCBI-GeneID:
111810887
NCBI-ProteinID:
XP_023553481
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Position
LG14:complement(1248298..1253954)
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AA seq
539 aa
AA seq
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MMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQL
TKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVSFLGMVTALLLIKALHWLA
QKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTRKASVSLFFSFEYM
ILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYG
VPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMT
VAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSTAAGHHGPQSDANQQGAGTT
SSSAQGTSDTGVANDNLSHHQARVRAAVAAASVYEKSYVYPCASTLVWSPGYAVVPQVER
PLPDSNNIEPNGRPQQFSFTGGPSNLSFTQFPQNLFVPFQPREDTGNSTDGLGSSQNVSG
LHLEAQQRFLQQQIEILQNQLQHLRKPDVEESSGAGEADKKGKSVAFSLSPSPSSSDSR
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacatatgcggggattagtttcattgcaaccatagtggttatctat
catgccttcaacagtagaggccagttctacccagcactggtctatttgtcaacttccaag
ataaatctagtgcttcttctcaatatgggtctagtcatcatgtgcattttgtggcagcta
acaaagaaaatatttctcggttctcttagagaagcagaggttgagaggctcaacgagcaa
tcatggaaggagttgatggaaatcctctttgccataactattttccggcaagatttttct
gtttcattccttggtatggttacggctctgttgttgatcaaagctttgcattggttggct
cagaagagggttgaatacatggaaaccactccatcggtgccgttgttgtctcatatccgg
atagtttccttcttaggcttcctctttgttctagatagtctgtttttttataattcgata
gaatctctgatacagacaaggaaggcctcggtttccctcttcttttcatttgagtatatg
attcttgcaacaacggctgtgtcaacgtttgtaaaatatattttctacgtcagtgatgta
ctcatggagggacaatgggaaaggaagcccgtctatacattttacttggaacttatccga
gacttacttcacttgtcaatgtacctgtgtttctttcttgtgattttcatgacctatggt
gtgcctttgcacttgatccgagagctctatgagatctttaggaattttaggattcgtatt
gcagattacatccgttacagaaagattacttcaaacatgaatgatcgatttcccgatgca
acgcctgaagaactcaattcaagtgatgcaacatgcattatctgtcgtgaagagatgaca
gttgcaaagaaactagtatgtggacatctttttcatgtccattgcctccgatcctggttg
gagcgacaacatacttgcccaacctgcagagcccttgttgtaccacctgaaggttcaagc
acagcagccggtcatcatggaccacaatctgatgctaaccaacaaggagcaggaaccaca
agttcatccgcgcaaggtacgagtgatacaggtgttgctaatgataatttgagccatcat
caggctagagtccgagctgctgtggctgcagcttctgtatatgagaaatcatatgtttat
ccttgtgcgagcacattagtatggtctcctggatatgcagtagttcctcaggttgaaaga
cctttgcctgactccaataacatagaaccaaatggacgtccacaacaattttcttttact
ggcggcccttccaacttgtccttcactcaatttccccagaatctttttgttccttttcag
ccacgagaggatactggaaacagtacggacggattgggcagtagtcaaaatgtatcaggc
ttacatcttgaagctcaacaaagatttctccagcaacagattgagatcctacagaatcag
ctgcaacatctccgtaaaccagatgttgaggaaagctcaggagcaggtgaggcagataag
aaagggaaaagtgtagcattctcgttgtcgccatcgccgtcgtcatctgattctcgatga
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