Cucurbita pepo subsp. pepo (vegetable marrow): 111810930
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Entry
111810930 CDS
T05351
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111810930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111810930
03012 Translation factors [BR:
cpep03012
]
111810930
Enzymes [BR:
cpep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111810930
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
111810930
Translation factors [BR:
cpep03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111810930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
HA2_C
OB_NTP_bind
HA2_N
nSTAND3
AAA_22
AAA_19
ATPase
ResIII
Ank_2
R3H
ABC_tran
Ank_5
PhoH
NACHT
AAA_25
T2SSE
AAA_7
Motif
Other DBs
NCBI-GeneID:
111810930
NCBI-ProteinID:
XP_023553546
LinkDB
All DBs
Position
LG14:complement(2486184..2495778)
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AA seq
1179 aa
AA seq
DB search
MVKKKPKNGGQKPKFTAVENVGSAIKKALRRFSSSNDEVFTFNAEDLKRGYSLVHRICQE
MHLISKSSGHGDQLRVSVYKSKPQMDTMKFSEKSKNVFDDLFSTYPPVDGESGEATTGEH
KKKADKQRRKKDDILFRPSMSKEEIMKKWESYTNRVKSVANLKKISEERSKLPIASFQDV
ITSKVKSHQVVIITGETGCGKTTQVPQFLLDYMWGKGEACKIVCTHPRQISTMSVAERIS
YERGENVGSDIGYKTWLDSHGGRHSSVILCTTRSLLRVLIPEGLEASEKRRKKVLSNLTH
IIVDEVHERDCCTDFILTILRSLLPSYPHLRLILMSATISAKRFSRYFGVCPIIDVPGIT
FPVKNFYLEDVLSIVKSQKENHLDGRELTEEDKLALDEAIHTAWLNDEFDPLLELVAKPG
SSQIFNYQHSVTGLTPLMVLAGKGRVSDVCMLLSFGTICELRAKDGTTALELAEQGDQKE
TAKAIREHLESSISNSEEEQRLIDTYLEKNSNSVDITLLEQLLEKICRDSKEGAILVCLP
GWNEICKTLDRLSDNPLFKDASKFLIIPLHSTLPYKMQKKVFSQPPPGCRKIILSSNIAE
TAITIDDVVYVIDSGWNEEKSYDPYNNVSTFQLSLISKACAKQREGRAGRCQPGICYHLY
SKSRASSLPDFQVPEIKRMPLEELCFQAKLLAPNRGIERFLRKTLDPPVLDTIGNAILVL
QDIGALSQDERLTELGEKLGSLPVHPVTSKMLIFAILMNCLDPALTLACVSDCKDPFTHP
MLPSARRKADAAKAELASLYGGHSDQLAIVAAFDCWKNAEERGQESLFCSKYYISRSTMS
KLSCMRKQLKMELVQNGFMPKDSSTCSLNARDPGVLHAILVAGLYPMVGRLRPPLMMGRR
AVVVTRSRGKVLLHRQSLNFEPSLKLTDRHPLIVFDKITCGDRGTDIRKCTVVGPVPLLI
VAKEIAVGPAKEKDNGKGGIENDHDGNDEIGVGVENKSNQQPEEMVMSSPDNSVTVVVDG
WLHFLSKALDIAQLYCLRDRLSSAILFKVKHPNEALPPVLGASMQALASILSYDGLSGTM
LNPTDISRFLPGRSIGTHKMSRREPKRFKRRKRPQNQDATRQQRAPECNTHKQSKSPKEQ
KAAKQQNPPSGGLSLNGHGSSVYGPYGTRGTSLKRPRGN
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagaagaagccaaagaatggaggacaaaagccgaagttcacagcagttgaaaat
gtcggcagtgcaattaaaaaggcactccgacggttttcatcgtcgaacgacgaagttttc
actttcaacgctgaggatttgaagcgtggatattctcttgttcatcgaatctgccaggaa
atgcatttgatatcaaagagttctgggcatggagaccaactacgtgtttctgtatataaa
tccaaaccgcaaatggacaccatgaaattttctgaaaagtccaaaaatgttttcgacgat
ttatttagtacgtatcctcctgttgatggagaatcgggcgaggcaacgactggggagcac
aaaaaaaaggcggataaacaaaggcgaaagaaagatgacattttgtttaggccgtctatg
agcaaggaagagataatgaagaaatgggaatcgtatactaatagagtgaagagtgtcgct
aatctgaaaaagatctcagaagagagatctaagcttccaattgcatcctttcaagatgtc
attacttcaaaagttaaatctcaccaggtcgttatcataactggtgagactgggtgtgga
aagacaacacaggtccctcagtttcttttggattatatgtggggtaagggagaagcatgt
aagatagtctgtacccatcctcgacaaatatccactatgtcagttgctgagcgaatctcc
tatgaaagaggagaaaatgttggaagtgatattggatataagacatggctggatagtcat
ggtggcaggcactcgtcagtcatactctgcacaacacgtagtcttttaagggtgctgatt
ccagaagggttggaagcttcagaaaagaggaggaaaaaagttctatctaacttaactcat
attattgtggatgaagttcatgaaagggactgctgcactgacttcattttaacaattttg
agaagcttgcttccatcatatcctcacttacggctgatactaatgagcgctacaatcagt
gctaaacggttttcaagatactttggtgtctgtccaatcatcgatgttcctggaatcacc
tttcctgtaaaaaatttctatctggaggatgtactttctattgtaaaatctcagaaagag
aaccaccttgatggacgtgagctaactgaagaagacaagcttgctttggacgaagcaatt
cacacggcttggttgaatgacgaatttgatccccttctagaattggttgctaaacctgga
tcctctcaaattttcaattatcagcattctgtgactggactaacacctttaatggttctt
gctggaaaaggtagagtttctgatgtttgcatgctgctatcttttgggaccatatgtgaa
ttacgtgccaaggatggcacaacggcgttggaattggctgaacaaggagatcagaaagaa
actgctaaagcaatcagagaacatttggaaagttccatatccaactccgaggaagaacaa
cggttgattgatacatatctcgagaaaaattctaattctgttgatattactcttttagag
cagctgttagaaaaaatatgccgtgattcgaaagaaggagctattcttgtttgtcttcct
gggtggaatgaaatctgcaaaactctagatagattatcagacaatcctcttttcaaagat
gcatcaaaatttttgataatacctcttcattcaacgcttccttataaaatgcaaaagaag
gttttcagccaacctcctcctggttgccgcaaaattattctgtctagtaatattgcagaa
acggccattaccattgatgatgtagtttatgttatagacagtggatggaatgaagaaaaa
agttatgatccttacaataatgtttctacttttcaattatctttgatatcaaaggcttgt
gccaagcagcgtgagggtcgtgctggtcgctgtcagcctgggatatgctatcacctttat
tcaaagtcccgtgcgtcgtctcttccagattttcaagttcctgaaatcaagagaatgcca
ttagaggaactctgttttcaggcgaaattgcttgctcccaatcgtgggatagagagattt
ttgcggaagactttggaccctccagttttagatactatcggtaatgcaatcttggtcctt
caggatattggggctttgtcacaagatgagagactgactgagcttggggagaaactaggt
tcattacctgttcatccagtaacgagcaagatgcttatcttcgccatattgatgaactgc
ctcgatcctgctttaactctggcttgtgtttcggactgcaaggaccctttcactcatccg
atgttaccaagcgctagaaggaaagctgatgctgctaaagcagagcttgcttctttgtat
ggtggccatagtgatcaactagctattgtagctgcatttgattgctggaaaaatgcagaa
gaaaggggtcaagagtccctcttctgttctaaatactacatttctcggagcactatgtcg
aagctatcttgcatgcggaagcaactcaaaatggaactagttcagaatggttttatgcct
aaggatagttcaacttgtagcttaaatgctcgtgaccctggcgtactccacgccatcctt
gtggctggtttatatccaatggtgggaagattacgtccaccccttatgatgggaagacgg
gctgttgtagtaactcgttcgaggggcaaagttcttttgcatcgacagtccctcaacttt
gaaccgtcacttaagctaaccgatcggcaccctcttattgtttttgacaagataacctgt
ggggatcgtggtacagacataagaaaatgtactgttgttgggcctgtcccattattaatt
gttgctaaggagattgctgttggccctgctaaggagaaagataatggtaaaggtggtatt
gaaaatgaccatgatggcaacgacgaaattggggtgggcgtcgaaaataaatcaaatcaa
caaccagaagagatggttatgtcctcccctgataactcggtaactgttgttgtcgacggt
tggctgcattttttgtcgaaggcgcttgatattgcccagttatactgcttgagagatcga
ttatcttcagcaatcttattcaaagtaaagcatccaaatgaagctcttcctcctgttctt
ggtgcctctatgcaggccttagcttccattctatcctatgatggcttatctggcacgatg
ctaaatccgactgatatcagccgttttttacctgggagatctataggaacacataagatg
tcacgtagagagccgaagcgattcaagcgacgcaaacgccctcaaaaccaagatgcaacc
cggcagcagcgcgctccagagtgcaatacacataaacaaagcaagtcccccaaggagcaa
aaggcagctaaacagcagaaccctccatcaggaggcctcagtttaaatgggcatggatca
agtgtgtatggaccatatggcacgcggggtacctctctaaagcggccacgtggtaactag
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