Cucurbita pepo subsp. pepo (vegetable marrow): 111811200
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Entry
111811200 CDS
T05351
Name
(RefSeq) sm-like protein LSM2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111811200
09123 Folding, sorting and degradation
03018 RNA degradation
111811200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111811200
03041 Spliceosome [BR:
cpep03041
]
111811200
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111811200
mRNA degradation factors
5'-3' decay
Lsm complex
111811200
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111811200
Complex C
U2 snRNP components
111811200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DUF150_C
DUF1256
Motif
Other DBs
NCBI-GeneID:
111811200
NCBI-ProteinID:
XP_023553723
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All DBs
Position
LG15:66975..69960
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AA seq
93 aa
AA seq
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MLFFSYFKDLVGREVTVELKNDLSIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVQLPPDGVDIELLHDATRREARGG
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttttctcgtacttcaaggatttggtgggcagagaggtgacagtcgagttgaaa
aatgacctatcaattagaggaactctgcactccgttgatcaatatctcaacatcaaactt
gaaaacaccagggttgttgatcaagacaaataccctcacatgctttctgttagaaactgt
tttatcaggggatcagtggtgagatatgttcaacttccaccagatggcgttgatatcgag
ctgttgcacgatgccacgagacgcgaggctcggggtggctaa
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