Cucurbita pepo subsp. pepo (vegetable marrow): 111811258
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Entry
111811258 CDS
T05351
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03015
mRNA surveillance pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111811258
09123 Folding, sorting and degradation
03018 RNA degradation
111811258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111811258
03041 Spliceosome [BR:
cpep03041
]
111811258
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111811258
mRNA cycle factors
Stress granule specific factors
111811258
Spliceosome [BR:
cpep03041
]
Complex C
Other components
Complex C specific factors
111811258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_occluded
RRM_3
RRM_RdRP1_2
RRM_Nup35
PABC_AtC3H46
DUF134
GH97_C
Motif
Other DBs
NCBI-GeneID:
111811258
NCBI-ProteinID:
XP_023553789
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All DBs
Position
LG15:5807491..5811416
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AA seq
650 aa
AA seq
DB search
MAQVPPQPQVPNSGADPAANGGGNQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRV
CRDLTTRRSLGYGYVNYSNPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIF
IKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGFGFVQFDTEEAALKAIEKLNGM
LLNDKQVFVGPFLRKQERESVSEKTKFNNVFVKNLAETTSEEDLRNMFGEFGPITSVVVM
RDGEGKSKCFGFVNFENADDAARSVDALNGHKVDGKEWYVGKAQKKSEREVELKNRFEQS
VKEAADKYQGANLYVKNLDDTIDDDKLKELFSAFGTITSCKVMRDPNGLSRGSGFVAFST
PEEASRALGEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMY
PPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQR
SGGRRAGAIQQTQQPVPMMQQQMLPRGRVYRYPPGRGLPDLPMPGVAGGMFSVPYEMGGM
PPRDAVHPQPVPVGALASALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMEVLRTVAQQTGNAAADQLASLSLTDNLDS
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttccacctcaacctcaagttcccaactccggcgccgacccggctgccaat
ggaggcggaaatcagcatgtgacgacgtcgttgtatgttggagatcttgacgtgaacgtc
accgattcccagctttatgatctttttaatcaggtggggcaggtggtttctgttagggtt
tgcagggatttgacgacccgtcgatcgcttggttatggctatgtcaattacagcaaccca
gtggatgcttcaagggcattggatgtgctaaacttcacccctttgaatgggaatcctatt
agagtcatgtattcgcatcgtgaccctagcatgcggaagagtgggtctggaaatattttt
atcaagaacttggacaaggcaattgatcacaaagcgttgcacgatacattctctgcattt
ggaaacattctctcctgcaaggttgctacagattcgtctgggcagtctaaaggctttggt
ttcgtacaatttgatactgaggaagctgccttaaaagctatagagaagttgaatggtatg
ctgctcaacgacaagcaggtgttcgtgggacctttccttcgcaagcaagaaagagaaagt
gtcagtgagaaaacaaaatttaacaatgtttttgttaagaatttagcagaaactacatct
gaagaagatttgaggaatatgtttggggagtttggaccaattaccagcgttgtggtcatg
agggatggggaaggaaaatcaaaatgctttggctttgtgaactttgaaaatgcagacgat
gctgctagatctgttgatgctctcaatggacacaaggttgatgggaaagagtggtacgtt
ggaaaagcccagaagaaatctgaaagggaagttgaactgaagaatcgatttgagcagagt
gtaaaagaagctgctgacaagtatcaaggtgcaaacttatatgttaagaatttagatgat
accatcgacgatgataaactgaaggagttattctctgcgtttggaaccattacctcatgc
aaggttatgcgtgatcccaatggactgagtagagggtctggctttgttgcgttctcaact
cctgaagaggcttctagagctcttggagagatgaatggaagaatgattgtgagcaaacct
ctttatgtggcacttgcacagaggaaggaagatagaagagctaggttgcaggcacagttt
tcccaaatgcagccaatggcaatggcatcttcagttgctcctcgtggcatgccgatgtat
cctccaggtggtccaggaatcggacaacaaatattttatggacaagctccacctactatt
atttcatcacagcctggctttggttatcagcagcaactcatgcctggaatgaggcctggt
ggaggtccgatgccaaatttctttgtaccaatggttcagcagggccagcaagggcaaaga
tctggtggaaggcgagctggtgctattcagcaaacccagcagcctgttccaatgatgcag
cagcagatgctaccaagaggacgtgtctaccgttatcctcctgggcgtggactgcctgat
cttcccatgcctggtgttgctggaggtatgttctctgttccatatgagatgggtggaatg
ccaccgcgggatgctgtccaccctcaaccagttcctgttggcgctttggcttctgccctt
gcaaatgcaactccagaccaacagagaacgatgcttggggaaaacctttatccacttgtg
gaacagctagagcctgataatgcggccaaggtaacaggcatgctattggaaatggaccaa
actgaggttctgcacttgctcgagtcaccggaagctctgaaggcgaaggttgccgaggcc
atggaggttttaagaactgttgctcagcagacgggcaatgcagctgctgatcagttggct
tcattatccctgactgacaaccttgattcctaa
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