Cucurbita pepo subsp. pepo (vegetable marrow): 111811380
Help
Entry
111811380 CDS
T05351
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111811380
09123 Folding, sorting and degradation
03018 RNA degradation
111811380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111811380
03041 Spliceosome [BR:
cpep03041
]
111811380
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111811380
mRNA degradation factors
5'-3' decay
Lsm complex
111811380
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111811380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Swm2
Motif
Other DBs
NCBI-GeneID:
111811380
NCBI-ProteinID:
XP_023553960
LinkDB
All DBs
Position
LG15:complement(1025894..1031149)
Genome browser
AA seq
87 aa
AA seq
DB search
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDAE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaatccttcgcagctactgccctcagagttaatcgaccgatgtatagggtct
aaaatatgggtcattatgaagggcgacaaagagcttgttggcactcttaaaggatttgat
gtttatgtcaacatggttcttgaagatgttactgaatatgagatcactgctgaggggaga
cggataacaaagttggatcagattctactcaatgggaacaacattgctattctcgttccc
ggtggatcgccggacgcagaatag
DBGET
integrated database retrieval system
