Cucurbita pepo subsp. pepo (vegetable marrow): 111811486
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Entry
111811486 CDS
T05351
Name
(RefSeq) coatomer subunit alpha-1-like
KO
K05236
coatomer subunit alpha
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpep04131
]
111811486
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpep04147
]
111811486
Membrane trafficking [BR:
cpep04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
111811486
Exosome [BR:
cpep04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
111811486
Exosomal proteins of bladder cancer cells
111811486
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_SCAP
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_DCAF4
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IP5PC_F
Aa-Ago_N
DUF6956
zf-CHCC
Motif
Other DBs
NCBI-GeneID:
111811486
NCBI-ProteinID:
XP_023554125
LinkDB
All DBs
Position
LG15:complement(6408130..6415845)
Genome browser
AA seq
1217 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHCKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHESPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCASFHPKDDLVVSASLDQTVRVWDISALTKKSVSPADDILR
LSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSSVMFHAKQDLIISNSEDKSIRVWDVTKRTGVQTFRREHDRFWILAAHP
EMNLLAAGHDSGMIVFKLGRERPAFVISGDTLLYTKDRFLRFYEFSTQRDTQVIPIRRPG
SINSNQSPRTIVYSPTENAVLICSDLDGGSYELYTIAHESIGRGDSLQDAKKGVGGSAVF
VSRNRFAVLDKSNMQVLIKNMKNEVVKKSVLPVAADAIFYAGTGNLLCRAEDRVVLFDLQ
QRVVLGDLQTPFIKYVVWSNDMESVALLSKHVIIITSKKLVHQCTLHETIRVKSGAWDDN
GVFIYTTLNHIKYCLPNGDSGIIRTLDVPIYLTKVSGNTIFCLDRDGKNKTIVIDAAEYI
FKLSLLKKKFDHVMSMIKNSQLCGQAMISYLQQKGFPEVALHFVKDERTRFNLALESGSI
QIAVASATALDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNIIKLSK
MLKIAEVKNDVMGQFHNALYLGDVRERVKILENVGHLPLAYVTASVHGLHDVAERLAAEL
GDDVPALPEGKVPSLLMPPSPVMCGGDWPLLRVMKGIFEGGLDTVGRGVADEVEEAADGD
WGEELEMVEVDGLPNGDVTAILEDGEVAEENEEDGGWDLEDLELPPEPETPKASASARSF
FVAPTPGMPVSQIWVQRSSLAAEHAAAGNFETAMRLLNRQLGIKNFAPLKSMFLNLHGGS
HSHLRAFSSAPVITLAVERGWSESASPNVRGPPALIFNFSQLEEKLKAGYRATTTGKFSE
ALKLFLSIIHTIPLIIVESKREVDEVKELIIIVKEYILGLQMELKRREVKDNPIRQQELA
AYFTHCNLQLPHLRLVLQNAMTVCFKAKNLATAGNFARRLLETNPVVENQAKAARQVLQA
AERNMTDATKLNYDFRNPFVICGATHVPIYRGQKDVSCPYCSTRFVPSQEGQLCTVCDLA
AVGADASGLLCSPSQIR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgaagtttgagacgaagagtaatagagtgaaggggctgagtttccactgtaag
aggccatggatcctggcgagtcttcacagtggtgtgatccagctatgggactaccggatg
ggtactcttattgatagatttgacgaacatgatgggcctgttcgtggtgttcattttcat
aaatctcagccgttgtttgtttccggaggtgatgattacaaaattaaagtatggaactat
aagacacaccgatgcctgtttactcttcttgggcaccttgattatatccgcaccgtgcaa
tttcaccatgagtctccatggatcgtgagtgccagtgatgaccaaactattcgaatttgg
aactggcagtctcgtacttgcatttctgtgttgactggccacaaccattatgttatgtgt
gcttcatttcaccctaaggatgaccttgtcgtgtctgcctccctagatcagactgttcgt
gtttgggacattagtgccttgacaaagaagtcagtgtcccccgcagatgacattttgcgg
ttgagtcagatgaatacagatctttttggaggtgttgatgctgtggttaaatatgtattg
gaaggtcacgaccgtggggtcaactgggcttctttccatccaactttgcccttgattgtc
tcaggagccgacgaccggcaagtcaagttgtggcgaatgaatgacacaaaagcttgggaa
gtggacacattgaggggtcacatgaataatgtttcaagtgttatgttccatgctaaacag
gatttgatcatatccaattcagaggacaagagcattcgtgtatgggatgttacaaagcgt
actggtgtccagacatttcgtcgtgaacatgaccggttctggattcttgctgctcatcca
gagatgaacctattggctgctggtcatgacagtggcatgattgtctttaagttggggaga
gaacgaccagcttttgttattagtggagatactttattgtataccaaggatcggtttttg
cggttctatgagttttcaactcaaagggatactcaagtaattccaattcgacgtcctgga
tccattaactcgaatcagagcccaaggacaatagtgtatagccctacagaaaatgctgtt
cttatttgctcagatctggatggtggatcatatgaattatataccatagctcatgaaagc
attggtcgaggtgatagtctacaagatgccaagaagggcgttggcggatcagcagtcttt
gtatctcgtaataggtttgctgtgttagataaaagtaacatgcaagtcttgatcaagaat
atgaagaatgaagtcgttaaaaagagtgtcctccctgttgctgcagacgcaatattctat
gcaggaacaggtaacttattatgcagagccgaggatagagttgttttatttgatctccag
caaagagttgttcttggtgacttgcaaaccccatttataaagtatgttgtctggtccaat
gatatggagagtgttgctttgcttagcaaacatgtcattatcattaccagcaagaagctt
gtgcatcagtgcactcttcatgagacaatccgtgtgaaaagtggtgcatgggatgataat
ggtgttttcatttatacgacgttaaatcatatcaaatattgtctgcctaatggagatagt
gggataatcagaactcttgatgtcccaatatacctcacaaaggtttctggcaataccatc
ttctgcttggatcgggatggaaagaacaaaaccatagttatcgatgctgcggagtatatc
ttcaagctgtcccttctgaagaaaaaattcgaccatgtaatgagcatgattaaaaactct
cagctttgtggacaagcaatgattagttatttgcaacaaaagggtttccctgaagttgct
cttcattttgtgaaagatgaaagaactcggtttaatttggctcttgagagtgggagcatt
caaattgcagttgcttcagcaactgctcttgatgagaaagaccactggtacagattgggt
gttgaggctcttcgtcaaggcaacgcaggaattgtcgaatacgcctatcaaaggacaaaa
aacttcgagaggttgtcttttctttatcttataaccggtaacatcatcaagttgtctaag
atgcttaagattgctgaagttaaaaatgacgtgatgggccaatttcacaatgccttatat
cttggtgatgtccgggagcgtgttaagatattggagaatgttggtcacttgccccttgct
tatgtcacagcttcagttcatggacttcacgatgttgctgaacgacttgcagctgaatta
ggagacgatgttccagctttgccggagggaaaagtaccatctctcctaatgcccccttct
cccgttatgtgtggtggtgattggcctcttctgagagtcatgaaaggcatatttgaaggt
ggattagatactgttggcagaggtgttgcagatgaagtagaggaggctgccgatggcgat
tggggcgaggagctggaaatggttgaagttgatggtttaccaaatggggatgttacagca
attctagaagatggtgaagtggctgaagaaaatgaagaagatggtggctgggaccttgaa
gacttggagcttcctcccgaaccagaaactcctaaagcttctgccagtgcacgttcattt
ttcgtggccccaactcctggcatgcctgtcagccaaatttgggtccagaggtcatctctt
gctgccgagcacgccgctgctggtaatttcgaaactgccatgcggttgctcaacagacaa
cttggaataaagaatttcgctcccttgaaatcaatgtttctcaatcttcatggtggcagc
cactcccatcttcgcgcattttcgtctgctccagtgataaccctggcagtcgaacgagga
tggagcgagtctgcaagcccaaatgtaagaggcccccctgcactcattttcaatttctct
cagttggaagagaagctgaaagctggttacagggccacaaccactgggaaattctctgaa
gctctgaagctttttcttagcattattcatacaataccattgataattgtggagtcaaag
agagaagttgacgaggtaaaggagttgattattatagtcaaagagtatatattaggtttg
caaatggagctcaagaggagagaagttaaggacaatccgattcgccaacaggaactcgcg
gcctattttactcactgcaatctgcagctaccacatttaagacttgtcttgcagaatgca
atgactgtctgctttaaggctaagaaccttgctacagcaggtaacttcgccaggcgcctg
ctcgaaaccaatcctgttgtcgagaaccaagcaaaggcagccaggcaagtgctgcaggct
gcggagaggaacatgacagatgctaccaagcttaattatgattttagaaacccctttgtg
atctgtggggctacacatgtgccaatttatcgaggacagaaagatgtctcgtgcccgtac
tgcagtacccggttcgtgcctagccaggaagggcagctttgtactgtttgtgatcttgct
gctgtgggggcagatgcatctggattactctgctctccttcccagattcgatga
DBGET
integrated database retrieval system
