KEGG   Cucurbita pepo subsp. pepo (vegetable marrow): 111811521
Entry
111811521         CDS       T05351                                 
Name
(RefSeq) WD repeat-containing protein RUP2-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
cpep  Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04120  Ubiquitin mediated proteolysis
cpep04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:cpep00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    111811521
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    111811521
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:cpep04121]
    111811521
Enzymes [BR:cpep01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     111811521
Ubiquitin system [BR:cpep04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    111811521
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     111811521
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_TEP1_C EIF3I WD40_like Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_SCAP YNR034W-A-like
Other DBs
NCBI-GeneID: 111811521
NCBI-ProteinID: XP_023554180
LinkDB
Position
LG15:complement(4212810..4214151)
AA seq 356 aa
MGNESPPLRREWTFSLASVVSSSSLIGPVSDTLGVVEFDPSDSLIATAGIARKIRGYSLS
NLLPNDGTVAMLDHTRASEFCICTPAKLSSLRWKPGAGGRILASGDYDGVVMEYDLEKKV
PVFERDEHGGRRVWSLDYSTVEPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSMVRSPV
CCVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFLDGGTIVSAST
DGSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKRVFVYDK
RWGEAVWVEEFDRVGSGYGLVSSVCWRQVGEDECTLVAGGSDGVLKVFVGEKTRSF
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgggaaatgaatccccgccgctccgtcgcgaatggaccttctccctcgcctccgtcgtc
tcctcctcctccctcattggccccgtttccgacactctcggcgtcgtcgaattcgaccct
tctgattccctcatcgccactgccggaatcgctagaaaaatccgtggctactctctttct
aatctcttgcccaatgacggtactgttgctatgttggaccatactcgtgcttctgaattt
tgtatctgtactccggccaagctcagtagtctccggtggaagcctggtgccggcggacgg
atcttggcctccggtgactatgatggggttgtcatggagtatgatcttgaaaagaaagtc
ccggtttttgaacgggatgaacacggcggacggcgcgtgtggagtttggattactctacg
gtggaaccaatggtgggcgcgtcggggtcggatgatggtacggtgcaagtgtgggacacg
cgctgtgacggtgtggattgtgtggcggtggtgcagccgagtatggtacggagtccggtt
tgttgcgtggagtttaatccctacggcggcgcgttggtggtagtcgggtgtgcagacagg
aaagcgtatgggtacgaccggcggaaaatgacggaggcggttatggtgtttgaggggcac
gcgaaaacggtgacgtatgtgaagttcctggacggggggaccatagtgtctgcgagtacg
gatgggagtttgaagatgtggaaggcggaggaggggggagatgggggtggaggtgcacgt
gtggtgcgcacgtacgaggggcacgtgaatgggaggagcttcgtcgggttatcggtgtgg
aggaatgggggtttaatcgggtgcgggtcggaggataagagggtgtttgtgtatgataag
aggtggggggaggcggtgtgggtggaggagtttgatcgggtcgggtcgggttatgggttg
gtgagtagtgtgtgttggaggcaagtgggggaggatgaatgtacgttggtggctggcggg
tcggacggtgttttgaaagtttttgtgggagagaagacgaggtcgttttga

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