Cucurbita pepo subsp. pepo (vegetable marrow): 111811574
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Entry
111811574 CDS
T05351
Name
(RefSeq) WD-40 repeat-containing protein MSI2-like
KO
K10752
histone-binding protein RBBP4
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03082
ATP-dependent chromatin remodeling
cpep03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111811574
03083 Polycomb repressive complex
111811574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpep03036
]
111811574
Chromosome and associated proteins [BR:
cpep03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
111811574
Histone modification proteins
HAT complexes
HATB complex
111811574
HDAC complexes
Sin3A-HDAC complex
111811574
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
111811574
PRC2.2
111811574
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
111811574
Heterochromatin formation proteins
Other heterochromatin formation proteins
111811574
Chromatin remodeling factors
NuRD complex
111811574
NuRF complex
111811574
NuRF complex (fruit fly)
111811574
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
CAF1C_H4-bd
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
EIF3I
WD_LRWD1
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
MIOS_WD40
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR19_1st
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_NUP159_NUP214
Motif
Other DBs
NCBI-GeneID:
111811574
NCBI-ProteinID:
XP_023554259
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All DBs
Position
LG15:complement(6690371..6693230)
Genome browser
AA seq
394 aa
AA seq
DB search
MAEEQAGGVDEVVEEFAIWKKNSPYLYDLLISHSLEWPSLTVHWVPSAPFPHQANPSLAV
HKLVLGTHTSEDVPNYLMVADSILPVKASETRIDISGENPIIPKIEITQKIRVEGEVNRA
RCMPQNAQIVGAKTSGCEVYVFNCAKQGAKAQGAECDPDLRLRGHDKEGYGLSWSPFKEG
YLLSGSNDQKICLWDVSSMADKNVLDAMHVYEVHESVVGDVSWHLKNENLFGSVGDDCLL
VIWDLRTNKSVDSVRAHEEEVNYVSFNPYNEWIVATASSDTTVGLFDLRKLAEPLHVLSS
HAEGVFQVEWDPNHETVLASSGDDRRLMVWDLNSIGSEQDGEAEDGPPELLFSHGGHKAK
ISDFSWNSHEPWVISSVAEDNSVQVWQMAKSIYR
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagaacaagccggcggtgtcgatgaggtggtggaggaatttgccatctggaag
aagaactctccctatctgtatgatcttctcatttcccactcactggaatggccatctctc
accgtccattgggttccatcggccccatttcctcaccaggccaacccatctctcgccgtc
cacaagcttgtcctcggaacccacacatcggaggatgtccccaattacctcatggtggcg
gattctattcttccggtcaaagcatccgaaaccagaatcgacattagtggggaaaatccc
attatcccaaagatagagataacccagaagatacgtgttgaaggggaggtgaacagagcg
cggtgcatgccgcagaacgcacaaattgttggtgcaaaaacgagtggatgtgaggtgtat
gtttttaattgtgctaaacaaggggcaaaggctcagggagctgagtgcgaccctgatttg
agattgaggggtcatgataaggagggttatgggttatcttggagtccgtttaaggagggt
tacctcttaagtggctcaaatgatcagaaaatctgtttgtgggatgtgtcttccatggct
gacaagaatgtgcttgatgcaatgcacgtttatgaggttcatgaaagcgtggtcggggat
gtgtcatggcatttgaagaatgagaatttgtttggatctgtaggcgatgattgcttgttg
gtgatatgggatttgcgcacaaataaatcagtggattctgttcgagctcacgaggaggag
gtgaactatgtttctttcaatccatataacgaatggattgtagcaacggcatcctcagat
accacagtgggtctgtttgatctccgaaagctcgccgaaccactgcacgttcttagcagc
catgcggagggagtgtttcaggtggagtgggatccaaatcatgaaactgtgttggcatct
tctggtgacgatagaaggttaatggtgtgggatctaaacagcataggaagcgagcaagat
ggagaggctgaagatgggcctccagagctgttgttttcacatggaggtcacaaggctaaa
atctcagactttagctggaacagccacgagccatgggtcatttcaagtgtggctgaagat
aactcagtacaggtctggcaaatggccaaaagtatctaccgatga
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