Cucurbita pepo subsp. pepo (vegetable marrow): 111811598
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Entry
111811598 CDS
T05351
Name
(RefSeq) exosome complex exonuclease RRP44 homolog A-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111811598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111811598
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111811598
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
CSD2
OB_RNB
Toxin_R_bind_C
Motif
Other DBs
NCBI-GeneID:
111811598
NCBI-ProteinID:
XP_023554295
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Position
LG15:complement(5964850..5975246)
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AA seq
934 aa
AA seq
DB search
MLHNKSFVKKTKSGKVMKQVREHYLRDDIYCGTSICKKCDSSVARLSASTAPILVLDTNV
VLNQIDLLENPAIDDVVMLSIVLDEVKNKNLSVYNRVRALCSNPLRRFFVFSNEHHKDTY
VKEMSGESKNDRNDRAIRVAAQWYQNHIGGATRVLLITNDRENRRKAVEEGICAETIESY
VRSLGQTHLLDLLVQSANEDANMEEVEDLRPSKRKVLYFEHKPMSEITSGLHRGIYHQGK
LRVNRYNPFEAYVGSESIGDEIIIYGRTNMNRAFDGDVVAVELLSRDQWHEEKSLTIADE
DDDEEEGVHLVPGSADDAPRTTSVVGSNGDSTSSSPRPAGRVIGIIKRNWHSYCGSLDPM
PMPAGSGGVAYALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRLSRYPSGHYVRS
IGEIGDRDTESEVVLIENDINSRPFSSQVLACLPPLPWSVSPADVANPIRQDLRHLNVFS
VDPPGCKDIDDALHCTALPNGNFEVGVHIADVTNFVHPGTPLDDEAAQRGTSVYLVERRI
DMLPKPLTEDVCSLRADVERLAFSVIWEMTPEADIVSTSYTKSIIKSSAALSYVEAQARM
DDSRLMDPITRDLRNMNTLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIR
EANQMVEEFMLAANVSVAEKILKHFPLCSLLRRHPTPTKEMLEPLIRTAVAVGLDLDVSS
SKALADSLDRALGDDPYFNKLIRILATRCMTQAVYFYSGDLSPPEYQHYGLAAPLYTHFT
SPIRRYADVIVHRLLAASLGIFKLPTLFLDRPKLTTIADNLNYRHRNAQMAGRASVELHT
LIYFKKRPTDTEARIVKIRSNGFIVFVPKFGIEGPVYLSGKGEKQSGEWFVDEQEQKIKK
LDGSLAYNILQAVRIHMEVVEPHPNRPKLQLTLL
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgttgcataacaagtcgtttgttaaaaagacgaagtctgggaaagtgatgaagcaagtg
agagaacattatcttcgagatgatatatattgtgggacttcaatttgcaaaaaatgtgat
tcttctgtagctcgtttgagtgcctctacagcccccattctagttcttgatactaatgtt
gttcttaatcagattgatttgcttgagaatcctgctattgatgacgtggtcatgctatcg
attgtgctggacgaggttaagaacaagaacttgtctgtttacaatagagttagagctctc
tgcagcaatcctctgcggagattctttgtcttctctaatgagcaccacaaggatacatat
gttaaggagatgagtggagaaagtaaaaatgatcgaaatgatagagcaattcgagtggct
gctcagtggtatcagaatcatattggcggtgctactcgtgttctactcataaccaatgac
agagagaataggagaaaggctgttgaagagggtatttgtgcagagacaattgaatcatat
gttagatctttgggtcaaactcatttacttgacctgttagtgcaaagtgcaaatgaagat
gcgaatatggaggaagttgaagatctgaggccatcgaagaggaaggttctctactttgag
cataaacccatgtcagaaattacttctggtttacatcgtggtatatatcatcaaggaaag
ctccgtgttaatcgatacaatccatttgaagcatatgtgggaagtgagagtattggtgac
gaaataattatttatgggcgtaccaacatgaaccgggcttttgatggtgatgttgtagca
gttgaacttctgtctcgagatcagtggcatgaagagaagtctttgactatagctgacgaa
gatgatgatgaggaagaaggtgttcatcttgttcctggtagcgctgatgatgccccaaga
actacatcggtagtgggctctaatggagattctacttctagttcaccacgaccagctgga
cgtgtcattggtatcataaagcgtaactggcattcttattgtggttctttggatccaatg
cctatgcctgccggaagtggtggtgttgcctatgctctatttgtttccaaagatcgccgg
attcctaaaattagaatccaaacccgtcagcttgagaatcttttggacaagagaatcatc
gtagcagttgattcttgggaccgtctatctagatatccttctggccattatgtacgatct
ataggagaaataggagatcgagataccgaaagtgaggtggtcttaattgaaaatgatatc
aactccaggccattttcttcacaagttttggcatgtttgccaccattaccatggtcagtg
tctcctgctgatgtagcaaaccccattcgacaggatttgcggcatctaaatgtttttagt
gtagaccctccaggttgcaaagatatcgatgatgcccttcactgtacagctcttccaaat
gggaattttgaagttggagtccatattgctgatgtaacaaattttgttcacccgggcact
ccattggatgacgaggctgcacaaaggggcacatcagtctacctcgttgagcggaggata
gatatgcttccaaaaccattaacagaagatgtatgttctcttcgagcggatgtggaaaga
ctggcattttcagtaatttgggaaatgacacctgaagcagatattgtttctactagctac
acaaaaagcatcattaaatcgagtgccgcgttatcatatgttgaagctcaagcgaggatg
gatgacagtcgattgatggatccaataactagagatttgagaaatatgaataccttagca
aagaaaatgaggttgagacgaatcgagagaggagctttgactcttgcttctgctgaagtc
aaatttcaaattgacaccgagacacacgaccctcttgatattggcatgtatcaaattcga
gaagctaaccaaatggtcgaggagtttatgcttgcggcaaacgtttcagtagcagaaaaa
attcttaagcattttcctctgtgttcattattaaggcgccatcctacaccgactaaagag
atgctggaacctttgattcgcaccgctgtagctgttggtcttgacttggatgtctcatca
tccaaagctctggctgattcactcgatcgtgcattgggtgatgatccctacttcaataag
ctcatcagaatactagccactagatgtatgacacaggcagtttacttctatagcggagac
ctcagccctccagaatatcaacattatgggcttgcagcacctctatatacccacttcacg
tcgcctattcgtcgttacgcagatgtcattgttcacagattgctcgctgcatcgttggga
atcttcaaacttccgacactattccttgaccgaccaaaactcacgacgatcgctgataat
ttaaattatcgacatagaaacgcccaaatggctggccgagcttccgtggagcttcatact
ctaatttacttcaaaaaacggccgacggacacggaggccagaatagtgaagataagatca
aatgggtttatagtattcgttcccaagttcggtatcgaaggaccggtatacttgtcgggc
aaaggtgagaagcaaagtggagaatggtttgtggatgagcaagaacagaagatcaagaag
ttggatggaagcctcgcatacaacattctacaggcggtgagaattcacatggaggttgtg
gagccccatccaaatagaccaaagctgcagcttactcttctttaa
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