Clostridium perfringens ATCC 13124: CPF_1872
Help
Entry
CPF_1872 CDS
T00378
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03420
Nucleotide excision repair
cpf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPF_1872
03430 Mismatch repair
CPF_1872
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_1872
Enzymes [BR:
cpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPF_1872
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPF_1872
MMR (mismatch excision repair)
Other MMR factors
CPF_1872
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_11
DEAD
UvrD_C_2
AAA_30
ResIII
SLFN-g3_helicase
NACHT
Fe-ADH
Motif
Other DBs
NCBI-ProteinID:
ABG83011
UniProt:
A0A0H2YQ57
LinkDB
All DBs
Position
complement(2103600..2105891)
Genome browser
AA seq
763 aa
AA seq
DB search
MSDNKILTYEREVLSETKRWIESEEERLEGEKLKANEKLDALNKKSKGAYDPEIEIVKKS
VDFLSKEEEKFKEAYNKPYFARIDFREYRKDFESFYIGKCGLGDMLEGEEKVIDWRAPLA
DLYYSGTQGEAYYKAPIGVIEGELSLKRKFLFDDEHSLKECFDEGINEIILKSGLNEEGD
GLIDEFLRINLENSTGTKLKDVVATIQKEQNDIIRAPKNSPLIIQGSAGSGKTTVALHRL
AYLLYRYKETITGEDILVVAPNKIFLDYISEVLPNLGVDKVEQKTFEELALKKLGMKGKV
ITKDKKLVEILENDLEKNKYIMNDSKIKGSILFKEMLDRYIQILEREDSDIDNIRICGYS
VFDSKEIKRLFLKDLIKYPVNKRKDEIKNYFSKKLGEKVSKVLDKVDFQYEYRIARLKKS
MEDSKERREKLIELYDERDNHKKEIKKSARKEFNEYFNRWKGIDTTNVYKNFFENKEIFN
EVTDGKIPEKLAEYMRENLANNIDKKIIDSDDLAAMLYLKFRIEGIEESSLLKHIVIDEA
QDYSMLQLYVMSMMASGKSLTIVGDIGQGIYSFKGINDWKEAIKLVYDENAEYKHLSQSY
RSTVEIINYANKVLVKQNTYEEPAKPVLRHGMVPEEIEFNNAKEFCERLDNIVKKVKDEG
KTSIAIVGKTLDECKKIRTLVKKYSNYDFELIKDDQKEFDLNLIIIPSYLTKGLEFDCTI
VYNLNKENYNDNEIDKKLLYVVLTRALHYEYIFYKEEKSPLIG
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgagtgataataagattttaacttatgagagagaagtcctttcagaaactaaaaggtgg
attgaaagtgaagaggaaagattagaaggtgaaaagttaaaagccaatgaaaaattagat
gctttaaataagaaatctaagggagcctatgatccagagatagaaatagttaagaagtct
gtggactttttatcaaaggaagaagaaaaatttaaagaagcttataataagccatacttt
gcaagaatagattttagggaatatagaaaagattttgaaagtttttatataggtaaatgc
ggacttggtgatatgctagaaggagaagaaaaggtaatagattggagagcgccactagct
gatctttattatagtggtactcaaggagaggcatattataaggcacctattggggtcatt
gagggtgagcttagtttaaagagaaaatttctttttgatgatgagcatagcttaaaggaa
tgttttgatgagggaattaatgaaattattttaaaatctggtcttaatgaagaaggggat
gggttaatagatgaattccttagaattaatttagaaaatagcacaggtactaaattaaag
gatgtagtagctactatacaaaaagagcagaatgatataataagagcacctaaaaattca
cctttaataatacaaggatcagcaggttcgggaaaaaccactgtagctcttcatagacta
gcttatttattatatagatataaggaaaccataactggagaagatattttagttgtagcg
ccaaataaaatatttttagattatatttctgaagtgttgcctaacttaggagtagataag
gttgaacaaaaaacttttgaggaactagccctaaaaaagttaggtatgaagggtaaagtt
ataactaaggataaaaaattagtagaaattttagaaaatgatttagaaaaaaataaatat
ataatgaatgatagtaaaataaaagggtctatattatttaaagaaatgttagatagatat
attcaaattcttgaaagagaagatagcgatatagataatataagaatttgtggatattca
gtttttgattcaaaggagataaaaagattattcttaaaggatttaataaaatatcctgtt
aacaagagaaaggatgaaatcaaaaactatttttctaaaaaattaggagaaaaggtaagt
aaggttttagataaggttgattttcagtatgagtatagaatagctagacttaaaaaaagt
atggaagattctaaggaaagaagagaaaaacttatagagctttatgatgagagagataat
cataaaaaagaaataaaaaagtctgctagaaaagaatttaatgaatactttaatagatgg
aagggtatagataccactaatgtttataaaaatttctttgaaaacaaggagatttttaat
gaagtaacagatggaaaaataccagagaagttagctgaatatatgagagaaaatttggct
aataatatagataaaaaaataatagattcagatgacttagcagctatgctttatttaaaa
tttagaatagaaggaatagaggaaagcagcttattaaaacatattgtcattgatgaggca
caggactattctatgctacagttatatgttatgtctatgatggcttcaggaaagtcttta
acaatagttggagatattggtcagggaatatattcatttaaaggcattaatgattggaaa
gaggctattaaattggtttatgatgaaaatgcagagtataagcacttaagccaaagctat
agaagtacagtagagataataaattatgcaaataaggttttagttaaacaaaatacctat
gaagagccagcaaaaccagttttaagacatggaatggttccagaggaaattgagtttaat
aatgcaaaagaattttgtgaaagattagataacatagttaaaaaagtaaaagatgaagga
aaaacttcaatagctatagttggtaaaacccttgatgaatgtaagaagataagaacttta
gttaagaaatattcaaattatgactttgaattaattaaagatgatcaaaaagagtttgat
ttgaacttaataattataccgtcatatcttactaaaggattagaatttgactgtactata
gtttataatttaaataaggaaaattataatgataatgaaatagataagaaacttctttat
gtggttttaactagagcgttacattatgaatatatattttataaagaggaaaaatcacct
ttaataggttga
DBGET
integrated database retrieval system
