Clostridium perfringens ATCC 13124: CPF_1934
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Entry
CPF_1934 CDS
T00378
Symbol
pnpA
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPF_1934 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpf03019
]
CPF_1934 (pnpA)
03016 Transfer RNA biogenesis [BR:
cpf03016
]
CPF_1934 (pnpA)
Enzymes [BR:
cpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CPF_1934 (pnpA)
Messenger RNA biogenesis [BR:
cpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPF_1934 (pnpA)
Transfer RNA biogenesis [BR:
cpf03016
]
Prokaryotic type
tRNA degradation factors
CPF_1934 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
RNase_PH_C
KH_1
KH-I_KHDC4-BBP
EXOSC1
Motif
Other DBs
NCBI-ProteinID:
ABG83292
UniProt:
Q0TPS3
LinkDB
All DBs
Position
complement(2171507..2173615)
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AA seq
702 aa
AA seq
DB search
MNHTHETIIAGRPMKVEFGKLGMLSDAAILMSYGDTVILTNVNASEKPREGIDFFPLSVE
YEERLYSVGKIPGGFIKREGKPSEKAILNGRAIDRPLRPLFPKGYRNDVQVVCTVVSVEN
DNLPEILAINAASMALCLSSIPFTTPVAAVQVGLIGEEFILNPTSKEREESSLQLTVCAT
KERVMMIEAGGDEIPEDTMINAIKFGFDKCQDIIKFQEEAVSMFGKEKKVPELHKVPEEI
EEAVREFAFDMISESMHITDRDERNAAMDEVKAKINEEFEEKYPDNMSDIGEAVYDMQKE
VVRHMLLKEGKRPDGRAFDEVRNIGCEVGLLPRTHGTGLFTRGLTQVMTVATLGSISEIQ
ILDGIGEEESKRYMHHYNFPAYSVGEVRPLRGPGRREIGHGALAERALEPLIPSEAKFPY
TIRLVSEVLSSNGSTSQASVCGSTLALLDAGVPIKRPAAGIAMGLITSKDLTEEEVLTDI
QGLEDFFGDMDFKVAGTEEGITSIQVDTKIKGLSEKVIHDAIYGARKARLMILDKIKECI
PAPREEVSKYAPKTSTLQIDPEKIRDVIGAGGKVINKIIADTGVKIDIKEDGLVYVSSAE
SEGVKEAVKIIEGLTKEVKAGEIYLGKVTKIAQFGAFVEVLPNKEGLVHISKLDNKRVEK
VEDVVSVGDEILVKVTEIDSQGRINLSRKDAIKEAEEENKQQ
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatacccatgaaactatcatagcaggaagaccgatgaaagttgagttcgggaaa
ttaggaatgctttcagatgctgctatattaatgagttatggtgatacagtaatattaaca
aatgtaaatgcatcagaaaaaccaagagagggaatagactttttcccactaagtgttgaa
tacgaagagagattatattcagttggtaaaataccaggtggatttataaaaagagaagga
aaaccttcagagaaagctatactaaatggtagagctatagacagacctttaagaccttta
ttcccaaaaggatatagaaatgatgttcaagtagtatgtacagttgtttcagtagaaaat
gataaccttcctgaaatactagctataaatgctgcctcaatggcattatgtttatcaagc
ataccttttactactccagtggctgcagttcaagtaggattaataggagaagaattcata
ctaaaccctacttcaaaggaaagagaagaaagttcacttcaattaactgtttgcgcaact
aaggaaagagttatgatgattgaagctggtggagatgaaatcccagaagatacaatgatt
aatgctatcaaatttggttttgataagtgtcaagatataataaaattccaagaagaagct
gtaagtatgttcggtaaagagaaaaaagtgccagaactacataaagtaccagaagaaata
gaagaagctgtaagagaatttgcttttgatatgattagtgagtcaatgcacattactgat
agagatgaaagaaatgctgcaatggacgaagttaaagctaaaataaatgaagagttcgaa
gaaaaatatccagataacatgtctgatattggagaagcagtttatgatatgcaaaaagaa
gtcgtaagacatatgcttttaaaagaaggaaaaagacctgatggaagagcttttgatgag
gtaagaaacattggttgtgaagttggattacttccaagaactcatggaacaggattattt
acaagaggacttactcaagtaatgactgttgcaactttaggatcaataagtgaaattcaa
atattagatggtattggtgaagaagaatctaagagatatatgcatcactataacttccca
gcatacagtgtaggagaagttagaccattaagaggaccaggtagaagagaaattggtcat
ggagctttagctgaaagagctttagaaccacttataccttcagaagctaagttcccatac
acaataagattagtatcagaagtattaagctcaaatggatctacttcacaggcttcagtt
tgtggtagtacattagcacttttagatgctggggttccaataaagagaccagcagcaggt
atagctatgggattaataacttcaaaagatttaactgaggaagaagttttaactgatatc
caaggtttagaagatttctttggagatatggactttaaagtagctggaacagaagaggga
ataacttcaatccaagtagatactaaaataaaaggtctatcagaaaaagttatacacgat
gctatatatggagcaagaaaagcaagattaatgatcttagataagattaaagaatgcata
ccagctccaagagaagaagtttcaaaatatgcacctaaaacatcaactctacaaatagat
cctgagaaaatcagagatgtaattggggctggtggaaaagttataaacaagattatagct
gacactggtgttaaaatagatataaaagaagatggattagtttatgtttcatcagctgaa
tcagaaggtgttaaagaagctgttaaaataatagaaggtttaactaaagaggttaaagct
ggagaaatttatttaggtaaagttacaaaaattgctcaatttggtgcctttgttgaggta
ttacctaataaagaaggattagttcatatttctaagttagataataagagagtagaaaaa
gttgaggatgtagtatctgttggagatgaaatcttagttaaggtaacagaaatagattct
caaggtagaataaatctttcaagaaaagatgcaataaaagaagctgaagaagaaaataaa
cagcaatag
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