Clostridium perfringens ATCC 13124: CPF_1937
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Entry
CPF_1937 CDS
T00378
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
cpf
Clostridium perfringens ATCC 13124
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cpf03016
]
CPF_1937 (truB)
Enzymes [BR:
cpf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
CPF_1937 (truB)
Transfer RNA biogenesis [BR:
cpf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
CPF_1937 (truB)
Prokaryotic type
CPF_1937 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Cas6b_C
Motif
Other DBs
NCBI-ProteinID:
ABG83260
UniProt:
Q0TPS0
LinkDB
All DBs
Position
complement(2175019..2175903)
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AA seq
294 aa
AA seq
DB search
MNGVINIYKNTGMTSFDVVAIVRRVAKMKKVGHTGTLDPAASGVLPVCLGKATKIIDYIM
ENKKVYRVNLKLGMVTDTYDLEGEVLREEDASHITKDEILNCINSFLGTIDQVPPMYSAL
KQNGVRLYELARQGIEVHREARKITIYSIENIKIESNDNIQMDVCCSKGTYIRSLCYDIG
EKLNVGATMTALERIQNGTFTKEEAINIEDLTEELLEKHIISIEKALDSFEKITVNEKFG
KLLRNGVKVFDNRMYSEEVEFNKLYRVYEDNGVFLGLGKRDEKGFKLEKLLIEE
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgaatggagtaattaacatatataaaaatacgggaatgacttcatttgatgttgtagcc
attgtaagaagagttgcaaagatgaaaaaggtaggacatacaggaactttagatccagcg
gcttctggagttttacctgtatgccttggaaaagctacaaaaattatagattatataatg
gaaaataaaaaagtttatagagtgaatttaaagcttggtatggttactgacacatatgat
ttagaaggagaagttttaagagaagaggatgcatcacatataacaaaggatgaaatatta
aattgtataaattcctttttaggaacaatagatcaagttccaccaatgtattctgcttta
aaacaaaatggagtaagattatatgaattagcacgtcaaggaatagaagttcacagagaa
gctagaaaaattactatttattctattgaaaatataaaaatagaatcaaatgataatata
caaatggatgtttgttgttctaagggaacatatataagaagcctttgctatgatattggt
gaaaaattaaatgttggagcaacaatgactgccttagagagaatacaaaatggtacattt
actaaagaagaagcaataaatatagaagatttaacagaagaacttttagaaaaacatatt
atttccattgaaaaggctttagattcttttgaaaaaatcacagtaaatgagaagtttggt
aagcttttaagaaatggtgttaaagtatttgataatagaatgtatagtgaagaagttgaa
tttaataaactatatagagtatatgaagacaatggagtctttttgggattaggaaaaagg
gatgaaaaaggatttaaattggagaaattactgatagaggagtag
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