Clostridium perfringens ATCC 13124: CPF_1945
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Entry
CPF_1945 CDS
T00378
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit, Gram-positive type
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03030
DNA replication
cpf03430
Mismatch repair
cpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPF_1945 (polC)
03430 Mismatch repair
CPF_1945 (polC)
03440 Homologous recombination
CPF_1945 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpf03032
]
CPF_1945 (polC)
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_1945 (polC)
Enzymes [BR:
cpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CPF_1945 (polC)
DNA replication proteins [BR:
cpf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CPF_1945 (polC)
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CPF_1945 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
DNA_pol3_a_NII
HHH_6
Rv2179c-like
tRNA_anti-codon
RNase_H_2
DEDDh_C
DNA_pol3_a_NI
HHH_3
YhfH
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABG82695
UniProt:
A0A0H2YQN8
LinkDB
All DBs
Position
complement(2181712..2186061)
Genome browser
AA seq
1449 aa
AA seq
DB search
MSNEFVKQINRSIKSDDNLNDLEFEITKFQLLKKSNTLRTIIKSKDQLSEEQKKIIKQYI
KKAIGFEINIEIMYYIDISDITLKQVVDQHWNHVCEKIIEKHPVLKEVLLNSPIVIEGEK
IIIKNGSEFLCTFVNKKHIDREIKGYIKSFFGINSLVEVKYDESLANKNYNDEKLNENKE
IAKKVIETMKAQAAQEKPVKKEISDNKHKSNGGNKGGYEKKSYKDEPKNENTILGRNIQG
DTIDISSIDMGSGIVTISGDVFKTDIFETKTGRIILTFFITDYTSSIAVKCFLRDKDKEH
VLENVKKGLYCKVRGEATMDPYAKEVVIMARDINKLTKIERMDTAEEKRVELHMHTTMSS
MDAVTAASKIVERAAKFGHKAVAITDHGVVQAFPDAQIAAKKNNIKVIYGVEGYLADNGT
PIVINGHEESFDDEYVVFDIETTGFSSKNDKIIEIGAVKLKDGEIVDSFSTFVDPKVNIP
YKITELTSITQNMVNGQPTIDEVLPKFMEFVGDSVLVAHNAAFDVGFIKKNLMDMGKTLK
NPVMDTVPLARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEILKFSFKKMKEE
MDIHDVKTLNEKYLSNIDVKKLPLHHIIILAKNQTGIKNLYKLVSMAHLDYFARRPRLPK
SIITEYREGLIIGSACEAGQLYKAVLEGKTDGELKEIASFYDYLEIQPIQNNEFLIRKGN
VKDEEELRELNRKIYDLGKEMDKPVVATCDCHFLDPNDEVFRRIIMAGQGYGDADNQPPL
YFRTTNEMMKEFEYLGEEACREVVIENTQKIADMVEAVKPIPDETFPPKIEGAEEEIRNM
TMNKVHSIYGENLPEVVQKRLDKELNSIINNGYAVLYLIAQKLVAKSLEDGYLVGSRGSV
GSSFVATMSDITEVNGLPPHYVCPNCKKSEFFLDGSISSGADLPDKNCPDCGAKYIKDGH
DIPFETFLGFEGDKEPDIDLNFSGEYQAVVHKYTEVLFGKGYVFKAGTIGTVAEKTAYGF
VKKYLQERGLVVSQAEIERLTIGCTGIKRTSGQHPGGIMVVPNDNEIYNFCPIQHPADDV
NTDIITTHFDYHSISGRLLKLDILGHDDPTVLRMLQDLTGLDPKTIPLNDPKVISLFTSP
DALGVTKEELGCEVGSYGLPEFGTKFVRQMLVDTQPKSFADLVRISGLSHGTDVWLNNAQ
YFIKEGYTTLKDCIATRDDIMVYLMYKDLPPKTAFTIMEKVRKGKGLSEDDEALMREKNV
PDWYIESCKRIKYMFPKGHAVAYVMMAVRIAYYKVYYPEAYYTTYFTVRADDFDADLICK
GEEAIKAKMEELNSLGNNISVKEKGLLTILEISYEMYKRGLNFLKVDLYKSEATKFKIEE
DGIRPPLNALQGVGDNAAKSIVECRVNGEFISKEDLRLRSKVSKTVIETLDNHGCLEGMQ
ESNQLSLFG
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaacgagtttgttaaacagattaacagatccataaaatcagatgataatcttaat
gatttagagtttgaaataactaagtttcaattgttgaagaaaagcaatactttaagaacc
ataataaaaagtaaagatcaattatcagaagaacaaaagaaaataattaagcaatatata
aaaaaagctataggttttgaaataaatatagagattatgtattacatagatatttctgat
ataactttaaaacaggtagtagatcagcattggaatcatgtttgtgaaaaaattatagag
aaacatcctgttttaaaagaagttttacttaattctcctatagtaattgaaggagaaaaa
ataattataaaaaatggttctgagtttttatgtacttttgttaataaaaaacatatagat
agagagattaagggatatataaaatcattctttggaataaattctttagtagaagttaaa
tatgatgaaagtttagctaataagaattacaatgatgaaaagttaaatgaaaacaaagaa
atagctaaaaaagttatagaaactatgaaagctcaagctgctcaagaaaagcctgttaaa
aaggaaattagtgataataaacataaatctaatggtggcaataaaggtggttatgagaaa
aaatcttataaagatgagcctaagaatgaaaatactatactgggaagaaatattcaagga
gatactatagatataagcagtatagatatgggatctggaattgttactatttcaggagat
gtatttaaaactgatatttttgaaactaagacaggtagaataatacttacattcttcata
acagactatacaagttctatagccgttaaatgcttcttaagagataaggataaagaacat
gttttagaaaatgttaaaaaaggtctttattgtaaagtaagaggggaagctactatggat
ccttatgctaaggaagttgtaataatggctagggatataaataagcttacaaaaatagag
cgtatggatacagcagaggaaaaaagagtagagcttcatatgcatacaactatgagctca
atggatgccgtaactgctgcaagtaaaattgttgagagagcagcaaagtttggacataag
gctgtagccataacagaccatggagttgttcaggcctttccagatgctcaaatagctgct
aaaaagaataacataaaagttatttatggggtagagggatatttagctgataatggaaca
cctatagttattaatgggcatgaggaatcctttgatgatgagtatgtggtttttgatata
gaaaccacaggtttttcaagtaaaaatgataagattatagaaattggtgctgttaagtta
aaggatggagaaatagttgattcctttagtacttttgttgatccaaaggtaaatattcca
tataagattacagagcttacaagtataactcaaaatatggttaatggacagcctactata
gatgaagtgcttcctaaatttatggaatttgtaggagattctgtactagtagcccacaat
gctgcctttgacgttggttttataaaaaagaacttaatggatatgggaaaaactttaaag
aatcctgtaatggatactgttcctttagctagatatctttatccagatttaaaaaaggtt
aagttaaatctagttgctaaacatttaggaattagccttgaaaatcaccatagagctgtt
gatgatgcaaaggctactgcggagatattaaagttttctttcaaaaagatgaaagaagaa
atggatattcatgatgttaaaactctaaatgaaaagtatttatcaaatatagatgtaaag
aaacttcctctacatcacataataatattagctaaaaatcaaactggaattaagaattta
tataaattagtttctatggctcacttagattattttgctagaagaccaagacttcctaaa
agtataataactgagtatagagaaggtttaataattggttcagcttgtgaagcaggacaa
ttatataaggcagttttagaaggaaagacagatggggaattaaaagaaatagcatctttc
tatgattatctagaaattcagccaatacaaaataatgaattccttataagaaaaggaaat
gtaaaagatgaagaagaacttagagagttaaatagaaaaatatatgatttaggaaaggaa
atggataaaccagtagtggctacatgcgattgtcatttcttagatcctaatgatgaagta
tttagaagaataataatggctggtcaaggatatggagatgcagataatcaaccaccttta
tattttagaactactaatgaaatgatgaaagagtttgaatatttaggagaagaggcttgc
agggaagttgtaatagaaaatactcagaagatagctgatatggttgaggctgtaaaacct
ataccagatgaaacatttcctcctaaaatagagggggctgaggaagaaataagaaacatg
actatgaataaggttcatagtatatatggagaaaatcttcctgaagttgttcaaaagaga
ttagataaagaacttaattctataataaataatggatatgcggtgctttatcttatagct
caaaaattagttgctaaatccttagaagacggatacctagttggttcaagggggtctgtt
ggttcctctttcgtagcaacaatgtcagatataacagaggttaatggattaccacctcat
tatgtttgtccaaattgtaagaaatcagaatttttcttagatggttctataagttcagga
gcagatttaccagataaaaattgtcctgattgtggagctaagtatattaaggatggccat
gatattcctttcgaaacattcttaggttttgaaggagataaagaaccagatatagacctt
aacttctcaggggaataccaagctgttgtacataagtacacagaggttcttttcggaaaa
ggatatgtatttaaagctggaactataggtacagtagctgaaaaaacagcttatggtttt
gtaaaaaaataccttcaagaaagaggattagttgtatctcaagctgaaatagaaaggctt
actattggatgtactggaataaaaagaactagtggacagcatcctggtggaatcatggtt
gttccaaatgacaatgaaatatataatttttgtccaatacaacatccagctgatgatgtt
aacacagatattataacaactcactttgattaccattcaataagtggtagacttcttaag
cttgatatacttggacacgacgacccgaccgttcttagaatgcttcaagacttaactggc
ttagatcctaagacaatacctttaaatgatcctaaggttataagtttatttacatcacca
gatgccttaggggtaactaaagaagaattaggatgtgaagttggtagttatggacttcct
gagttcggtactaaattcgttagacagatgctagttgatactcaacctaagagttttgca
gaccttgtgagaatatctggactttcacatggtactgatgtttggcttaataatgctcag
tactttattaaggaaggttatactacactaaaagactgtatagcaacaagagacgatatt
atggtttatcttatgtataaagatcttcctcctaagacagcctttactataatggaaaag
gtaagaaagggaaaaggacttagtgaagatgatgaagctttaatgagagagaaaaatgta
ccagattggtatattgaatcttgtaaaagaataaaatatatgttccctaaaggccatgct
gttgcatatgttatgatggcagttagaatagcatattataaagtttattatccagaagca
tattacacaacatattttacagtaagagctgatgatttcgatgcagacttaatttgtaag
ggtgaagaagcaataaaggcaaagatggaagaactaaattctttaggaaataacatatca
gtaaaagaaaaaggtcttttaactattttagaaatttcttatgaaatgtataaaagagga
ttgaatttcttaaaggttgatttatataaatcagaagcaactaagtttaagatagaagaa
gatggtataagacctccattaaatgctcttcaaggagttggagacaatgctgcaaaaagt
atagttgaatgtagagttaatggagagtttatttcaaaggaagatttaagacttagatct
aaggtttcaaagactgtaatagaaactttagataatcatggatgcctagaaggaatgcaa
gaaagtaaccaacttagtttgtttggctaa
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integrated database retrieval system
