Clostridium perfringens ATCC 13124: CPF_1956
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Entry
CPF_1956 CDS
T00378
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
cpf
Clostridium perfringens ATCC 13124
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpf03032
]
CPF_1956 (topA)
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_1956 (topA)
Enzymes [BR:
cpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CPF_1956 (topA)
DNA replication proteins [BR:
cpf03032
]
Prokaryotic type
DNA Topoisomerases
CPF_1956 (topA)
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CPF_1956 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Toprim_2
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
ABG83977
UniProt:
A0A0H2YTV3
LinkDB
All DBs
Position
complement(2195749..2197851)
Genome browser
AA seq
700 aa
AA seq
DB search
MGQKLVIVESPAKAKTIEKYLGKNYVVEASMGHVRDLPKSQLGVDIENEYNPKYITIRGK
GELLSKLRKLAKKSDKIYLATDPDREGEAISWHLANVLKIDENENCRIEFNEITKDAVKN
SIKHPRKINCNLVDAQQARRVLDRLVGYEISPLLWRNVKWGLSAGRVQSAALKLICDREE
EIKKFNPEEYWTVDVKLKKGKKSFPVKLTTKNKKKIEIKNKEQADQIIDELKENEYIVSK
IKKGTKNKNPLAPFTTSTLQQEASKKLNFMTKKTMSVAQQLYEGVEVKKFGTVGLITYMR
TDSVRISKEAQEKALNFIDETYGKEYVPEEPRVYKGKKNIQDAHEAIRPTYVEITPEIAK
ANLSNDQYKLYALIWKRFIASQMATCILNTNSLEIKNGDYTLRASGSTIKFDGFMKVYEY
ILGEEEESVLLPELEENEVLKEESIEGKQHFTQPPARYSEAAFVKLLEEKGIGRPSTYVP
TISTLISRKYVDREKKILIPTELGFIVNDILSNYFKQIVDTDFTAEMEVKLDNVEAGKES
WTHIVDEFFTPLKEDIEKAEKEISKVIIEDKVSDVPCDKCGRLMVIKHGRFGDFLACPGY
PECQNTKPIVEEVDANCPLCGGKILVKRSKKGNRFYGCSNYPECNFVSWYEPTNEKCPEC
GSYMVKRYSKSKGEYLQCSDKECKYEKIIEKNNDENNSEK
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaaaaattagtaattgttgagtcaccagctaaagccaagacaatagaaaaatat
ttaggtaaaaattatgtagtcgaagcttccatgggacatgtaagagatttgccaaaaagc
caattaggcgttgatatagaaaatgaatataatcctaaatatataacaataagaggaaaa
ggtgaacttttaagcaaacttagaaagttagctaaaaaaagtgataagatataccttgca
actgaccctgatagagaaggggaagctatatcttggcacttagctaatgtgcttaagata
gatgaaaacgagaattgtagaatagaatttaatgaaataacaaaggatgcagttaaaaat
tcaataaagcatccaagaaaaataaattgtaatttagtagatgctcagcaagcaagaaga
gtgttagacagattggttggatatgaaataagtccacttctatggagaaatgtaaaatgg
ggattgagtgctggaagggttcagtcagcagcattaaaacttatatgtgatagagaagaa
gaaataaagaagttcaatccagaagagtattggactgttgatgttaaacttaaaaaagga
aagaagtctttccctgttaagttaacaactaaaaataagaaaaagatagaaataaaaaat
aaagaacaagcagatcaaataatagatgaacttaaagaaaatgaatatatagtaagcaag
ataaaaaaaggaactaagaataaaaatcctttagctccatttactacaagtactcttcaa
caagaggcaagtaaaaagcttaactttatgacaaagaaaacaatgtcagtagctcaacaa
ctttatgaaggggttgaagttaagaaatttggaactgtaggtttaataacttatatgaga
actgattctgttagaatctcaaaggaagctcaagaaaaagctcttaactttatagatgaa
acatatggaaaagagtatgttccagaggaaccaagagtatataaaggaaagaaaaatata
caagatgcccatgaagccataagacctacatatgttgaaataacaccagagattgctaag
gcaaacttaagtaatgatcaatataagttatatgctttaatatggaaaagattcatagca
agccaaatggctacatgtatattaaatactaatagcctagaaattaaaaatggagattat
acattaagagctagtggatccactataaaatttgatggtttcatgaaagtttatgagtat
atattaggggaagaggaagaatcagtacttttacctgaattagaagaaaatgaagtttta
aaagaagaatcaattgaaggtaaacaacattttactcaaccacctgctaggtattcagag
gctgcttttgttaagcttttagaggaaaaaggtattggaagaccaagtacttacgttcca
acaatatctacattaataagtagaaaatatgtagatagagagaaaaagattcttatacca
acagaattaggctttatagtaaatgatatactttctaattattttaagcagatagttgat
actgactttactgcagaaatggaagttaaacttgataatgttgaagctggaaaagaaagt
tggactcatatagtagatgaattctttactccattaaaggaagatatagaaaaggcagaa
aaagagatatctaaggttattatagaagataaagtcagtgatgtaccttgtgataaatgt
ggaagacttatggttattaagcatggaagatttggagatttcttagcttgccctggatat
ccagagtgtcaaaatacaaaacctatagttgaagaggttgatgcaaactgtccattatgt
ggaggaaagattttagttaagagaagtaaaaagggaaacagattctatggatgtagtaat
tatccagagtgtaatttcgtaagttggtatgaaccaacaaatgaaaaatgcccagaatgt
ggttcatatatggttaagagatactctaagagtaaaggtgaatatttacagtgtagcgat
aaagaatgtaaatatgaaaaaataattgaaaaaaataatgatgaaaataactcagaaaag
tag
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