Clostridium perfringens ATCC 13124: CPF_1998
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Entry
CPF_1998 CDS
T00378
Symbol
priA
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CPF_1998 (priA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_1998 (priA)
Enzymes [BR:
cpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPF_1998 (priA)
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CPF_1998 (priA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PriA_3primeBD
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
PriA_C
AAA_30
Zn_ribbon_6
Cas3-like_C_2
AAA_11
T2SSE
AAA_19
FkbH_N
PIF1
DUF2321
zf-CHY
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
ABG82475
UniProt:
A0A0H2YNT9
LinkDB
All DBs
Position
complement(2236983..2239178)
Genome browser
AA seq
731 aa
AA seq
DB search
MEKFAEVIVNSEAVTIDKPFTYKIKEDLVHNIKVGHRVLIPFGNGNKKIEGFVLKILDNV
ENKSIRYKSIYNVCDNEPLLSEDSLKLIKFLREKYLCKYIDAIRVMIPPKIMSGNKEKTK
QVIVFKKYIEELSEPQKRTLELIEEKSGGFTKAEWNKIFNISTYMINKLIELDCASSEEV
RVGRENLREFKPYPPKSLNEEQIRAYDTILESDKNIFLLKGVTGSGKTEVYMNLVSYMLL
FEKSSLILVPEIALTPQMIERFKGRFGKDVAVFHSRLSDGERYDEWYRVKNDQVKVVIGA
RSAIFLPFNDLGLIVVDEEHESSYKSDMNPKYNTIEVCEYLSFLKNCKVVLGSATPSVVS
FYKALKGNYELIELKKRVNNGELPNVSIVDMREELKSNNKTMFSRDLYLKIKDRLEKKEQ
IILFLNRRGFSSFVSCRSCGFVFKCNNCDISMTYHNNGYLVCHYCGNTEKMPKLCPKCGS
NYVKHFGVGTEKLEEAVHHYFKEAKVLRMDVDTTRKKNSHEEIYNSFKSKEADILIGTQM
IAKGLDFPDVTLVGVMAADMSLNLPDYKSSEKTFQLITQVSGRAGRGDKKGDVIIQSYSP
KHYALTCARDNNYEEFFKREINVRKLMAYPPFDDLFLINLSAKGEIKVKIFAKKLEMYLR
NILKEYDNIFIYEACPCSISKIKNVYRWQILIKGKLDLEVCSKIKKGVYELSKDVYNEIK
IGLDINPNSLM
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
ttggagaaatttgctgaagtaattgtaaatagtgaagctgttacaattgataagcctttt
acatataagattaaagaagatttagttcataatataaaggttggacatagagttttaatt
ccttttggaaatggaaataaaaaaattgaaggttttgttttaaaaatattagataatgtt
gaaaataaaagtataagatataaatctatatataatgtttgtgataatgaacccttatta
agtgaagattctttaaagcttattaaatttttaagagagaaatatttatgtaagtatata
gatgctataagagttatgattccacctaaaataatgagtggaaataaggaaaaaacaaaa
caagttatagtatttaaaaaatatatagaagaattaagtgagccacaaaaaagaacttta
gagctaattgaagaaaaaagtggtggtttcacaaaagcagaatggaataaaatttttaat
atatcaacatatatgataaataaattaatagaattagattgtgcttctagtgaagaagta
agggttggaagggaaaatttaagagaatttaagccttatccgcctaagagtttaaatgaa
gaacagataagagcatatgatacaattttagaaagtgataaaaatatatttttattaaag
ggcgtaactggaagtggaaaaacagaagtatatatgaatttagttagttatatgctcctt
tttgaaaagagttcattaatattagtaccagaaatagctctaactcctcaaatgattgaa
agatttaaagggagatttggaaaagatgtagcggtctttcatagtaggctttcagatgga
gagagatatgatgaatggtatagggttaaaaatgatcaagttaaggttgttataggagcc
agatctgctatatttttaccctttaatgatttaggactaatagtagtagatgaagaacat
gaaagtagttataaatcagatatgaatcctaaatataatactatagaagtttgtgagtat
ttaagttttctaaaaaattgtaaggttgttttaggttcagcaacccctagtgttgttagt
ttttataaagcacttaaagggaattatgaattaattgaacttaaaaagagagttaataat
ggagaacttcctaatgtatctattgtggatatgagggaagagctaaaatcaaataataaa
acaatgtttagtagggatttatatttgaagataaaagatagattagagaaaaaagaacaa
ataattttgtttttaaatagaagaggattttcatcctttgtttcttgtagaagttgtgga
tttgtttttaaatgtaacaattgtgacatatcaatgacttatcataataatggatactta
gtttgccattattgtggaaatactgaaaagatgcctaagctttgccctaagtgtggcagt
aactatgttaaacattttggggtaggaacagagaaattagaggaagcagtacatcattat
tttaaagaagcaaaggttttaaggatggatgtagatacaacaagaaagaaaaattctcat
gaggaaatttataactcatttaaaagtaaagaagcagatatattaataggaactcagatg
atagctaaggggcttgatttcccagatgtaaccttagttggagttatggctgcagatatg
tctttaaatttgccagattataagtctagtgaaaagacatttcaacttataactcaggta
agtggtagagcaggacgtggtgataaaaagggagatgtaataattcaaagttattctcca
aaacattatgctttgacctgtgcaagggataataattatgaagagttctttaaaagagaa
ataaatgtaagaaaacttatggcatatccaccttttgatgatttgtttttaataaaccta
agtgcaaagggagaaataaaagtaaagatttttgcaaaaaaattagagatgtatttacgt
aatatcttaaaagaatatgataatatatttatatacgaagcatgtccttgttctataagt
aaaataaaaaatgtttatagatggcaaattctaattaagggaaaattagatttagaggta
tgctctaaaataaaaaaaggggtttatgaattatccaaagatgtttataatgagattaag
attggtttagacataaatcctaatagcttaatgtaa
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