Clostridium perfringens ATCC 13124: CPF_2264
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Entry
CPF_2264 CDS
T00378
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CPF_2264 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpf03021
]
CPF_2264 (rpoD)
Transcription machinery [BR:
cpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CPF_2264 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
HHH_4
Motif
Other DBs
NCBI-ProteinID:
ABG82215
UniProt:
A0A0H2YPG0
LinkDB
All DBs
Position
complement(2511938..2513038)
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AA seq
366 aa
AA seq
DB search
MKAKTTKAKKGEGKEKVDKMVLVKRLIDKGKKSGSLTYKEIMDELDEIELNPEQIEKIYE
VLESMGIEVISEIEQEEEEEEELDLSVPEGIAIDDPVRMYLKEIGKVQLLSSEDEIELAK
KIEEGSNYAKKKLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKFDYRKGYK
FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLVQELGRDPLPEELSKQ
MDMPVDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFTMLKEQLIN
VLDTLTPREEKVLRLRFGLDDGRARTLEEVGKEFNVTRERIRQIEAKALRKLRHPSRSKK
LKDYLD
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctaaaacaacaaaagcaaaaaaaggtgaaggtaaagaaaaagttgacaaaatg
gtcttagtaaaaagacttatagataaaggtaaaaaaagcggttcattgacttacaaggag
ataatggatgagcttgatgaaatagaattaaacccagaacaaatagaaaaaatctatgag
gttctagaatcaatgggtatagaggtcataagtgaaatagagcaagaagaggaagaggag
gaagaattagatctttctgttccagaaggtattgctattgatgaccctgtaagaatgtac
ttaaaagaaataggtaaagtgcaactattatcatcagaggatgaaatagagcttgctaaa
aaaatagaagaaggaagcaactatgctaagaaaaaattagcagaggctaacttaagactt
gttgtaagtatagctaaaagatatgttggtagaggaatgttattcctagatcttatacaa
gaaggtaacttaggtcttataaaggctgttgaaaaatttgattacagaaaagggtataag
ttctcaacatatgctacatggtggataagacaggcaataactagagctattgctgaccaa
gcaagaactataagaataccagttcatatggtagaaactataaataaacttataagaata
caaagacaattagttcaagagttaggaagagatccattaccagaggaattatcaaaacaa
atggatatgccagtagataaggtaagagaaatcttaaaaatagctcaagaaccagtttca
ttagaaactccaattggtgaagaggaagattcacatttaggtgactttataccagatgat
gatgctccagcaccagcagaggcagcagcctttacaatgttaaaagaacaattaataaat
gttttagatactttaactcctagagaggaaaaagtattaagattaagatttggattagat
gatggaagagctagaactcttgaagaagttggtaaagaattcaacgtaactagagagaga
attagacagattgaagcaaaagctttaagaaaattaagacatccaagtagaagtaaaaag
ttaaaagattatttagattag
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