Clostridium perfringens ATCC 13124: CPF_2433
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Entry
CPF_2433 CDS
T00378
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
CPF_2433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_2433
Enzymes [BR:
cpf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
CPF_2433
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CPF_2433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
PIF1
AAA_5
AAA_22
PhoH
UvrD_C
HHH
SLFN-g3_helicase
UvrD-helicase
NTPase_1
HHH_2
nSTAND3
5_3_exonuc
AAA
AAA_28
DEAD
HHH_3
T2SSE
DnaB_C
NPHP3_N
AAA_29
HerA_C
ABC_tran
bpMoxR
Anticodon_2
Motif
Other DBs
NCBI-ProteinID:
ABG84528
UniProt:
A0A0H2YU05
LinkDB
All DBs
Position
complement(2708929..2711163)
Genome browser
AA seq
744 aa
AA seq
DB search
MEALNGIVESIVFKSSDTGYTVIKFRENNIIHTAVGVLPHVKEGQNLKITGSWVNHSQFG
KQFKVEECEEILPTSKDGIEKYLSSGIIQGIGPVTAKKIVNKFGEDTLNILDNNIERLKE
IEGIGKKKLETIIESYREQRELKNITIFLQTHGLSVNQCLKIYKKYGASSVDTVKNNPYI
LCDEISGIGFKTSDKIARSLGIEIDSPFRIQSGIRYVINEFCANGHTFMPKDELIKEASN
VLTVSGDIIEENIKNAALDRKIKLEKVNDKEGVFTIPNYYCELGITNRILTLAISNFQDI
SVDVEHLILQFEKKNNITFAESQKDAIISAFQNGIEIITGGPGTGKTTIIKCIIEIFETC
GLKVLLGAPTGRAAKRMSESTGKEATTIHRMLDMGVFEKEESVFVTNAEEHSLEADVVII
DEASMIDITLMNALLKSIKVGTRLIIVGDVDQLPSVGAGNVLNDFIESGFTKVVRLKEIF
RQGKESMIVVNAHKINKGEMPKLNEKGTDFFFIRNDIQEGILNTIIDLINTRLPKFNSNW
DKLKSIQVLVPMKKGVLGVTNLNERIQNVLNPKAPYKKEKEFRSMVFREGDKVMQIKNNY
SLKWTRIAGKGEHEGLGVFNGDMGFIESIDLEGKKLSIIFDDERRVIYDFMYLDELDLAY
AITIHKSQGSEFPVVIIPAYMGAPLLMNRNLLYTGITRAKEMVVVVGIPKALKYMVDNTR
SMERYSSLNWRIKEVISNEVFEQD
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggaagcattaaatggaatagttgagagtatagtatttaaaagctcagatacagggtat
acagttataaaatttagagaaaataatattattcatacagcagtgggagttttaccacat
gtaaaagaaggtcaaaatttaaaaattacaggaagttgggttaaccattcccagtttgga
aaacaatttaaggtagaagaatgtgaagagatattacctacttcaaaggatggaatagaa
aaatatttatcttctgggataatacagggaataggacctgttacggcaaaaaaaattgta
aataaatttggagaagatactcttaatattttagataataatattgagagattaaaagaa
atagaaggaataggtaaaaagaagttagagaccataattgagtcttatagagaacaaaga
gaattaaaaaatataactatatttttgcaaacccatggattaagtgtaaatcaatgtttg
aagatttataaaaaatatggagctagttcagttgatacagttaaaaataatccatatata
ctttgtgatgaaatttcaggaataggatttaagacttctgataagattgctagaagttta
ggaatagaaattgactcaccttttagaattcaaagtggtataagatacgtaataaatgaa
ttttgtgctaatggacatacttttatgccaaaggatgaacttataaaggaagcaagtaat
gtattaactgtaagtggagatataatagaagaaaatattaaaaatgcagctttagataga
aaaataaagttagagaaagttaatgataaagaaggtgttttcacaatacctaattattat
tgtgagcttggaataactaataggattttaactttagctataagcaatttccaagatata
agtgtagatgttgagcacttaatacttcaatttgaaaagaaaaataatataacttttgca
gaatcccagaaagatgctataataagtgcttttcaaaatggaatagagataataactggg
ggaccaggaacaggaaagaccactataataaagtgtataattgaaatttttgaaacttgt
ggtttgaaggttcttttgggagcacctactggaagagcggctaaaagaatgagtgaatct
acaggaaaagaagctactacaatacatagaatgcttgacatgggagtctttgaaaaagaa
gaaagtgtttttgtaaccaatgcagaggaacattccttagaggctgatgtggttataata
gatgaggcatcaatgattgatataactttaatgaatgctttacttaaatctattaaggta
ggtactaggcttataatagtaggagatgttgatcagcttccatcagtaggagctggaaat
gtattaaatgattttatagagagtggatttacaaaggttgtacgtctaaaggaaatattt
agacaaggaaaagagagtatgattgtagtaaatgcacataaaataaataaaggtgagatg
cctaagttaaatgaaaaaggtactgatttcttcttcataagaaatgatattcaagaggga
atattaaatactattatagatttaataaatactaggttgcctaagtttaactcaaattgg
gataagttaaaaagtatacaggttttagttcctatgaaaaagggtgtattaggagttaca
aatttaaatgaaagaattcaaaatgtcttaaacccaaaggctccatataaaaaagaaaaa
gaatttagaagtatggtatttagagagggagataaggttatgcagataaagaataactac
tctctaaaatggaccagaatagctggaaaaggtgagcatgaaggcttgggtgtatttaat
ggagatatgggatttatagaaagtatagatttagaagggaaaaaactatctataatcttt
gatgatgaaagaagagttatttatgattttatgtatttagatgaattagatttagcttat
gcaatcacaatacataaaagtcaaggaagtgaattccctgtagtaataatacctgcatat
atgggtgcaccattacttatgaatagaaatttattatatacaggaataactagggcaaaa
gaaatggttgtagtagttggaatacctaaagcattaaaatatatggttgataatacaagg
agtatggaacgttattcctctttaaattggagaataaaagaagtaatatctaatgaggtt
tttgaacaagattaa
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