Clostridium perfringens ATCC 13124: CPF_2471
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Entry
CPF_2471 CDS
T00378
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPF_2471 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpf03021
]
CPF_2471 (rho)
03019 Messenger RNA biogenesis [BR:
cpf03019
]
CPF_2471 (rho)
Transcription machinery [BR:
cpf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CPF_2471 (rho)
Messenger RNA biogenesis [BR:
cpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPF_2471 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
S1CSD-TOTE-2
NACHT
AAA_22
ATPase_2
OB_RNB
ABC_tran
AAA_25
SAP
Motif
Other DBs
NCBI-ProteinID:
ABG83575
UniProt:
A0A0H2YRL5
LinkDB
All DBs
Position
complement(2740270..2741739)
Genome browser
AA seq
489 aa
AA seq
DB search
MLKLNIEQYENMTLVQLKEQAKELGIKNISKKKKSELIEELKAEFNKQNSNTKVIHKDGV
ILREKISQKEQGGNKESFSGERVVRNSNNYNNNNSNYNNSNDEGKKEQLKDMISSSDSAK
GILEILDNNNFGFLRCRNYLTSEDDIYVSPSQIRRFGLRTGDEVQGKVRIPKDGEKFKAL
LYVERVNGESPEKAVGRKKFEELTPIYPKERLRLETENGRDLSSRLMDIICPIGKGQRGM
IVAPPKAGKTTLLKRIAQNISKNNPEVKLIVLLIDERPEEVTDMKRSIDGEVIYSTFDEE
PQNHAKVSSIVLERAKRMVEQGRDVVILMDSLTRLSRAYNLTVTPSGRTLSGGLDPGALI
MPKKFFGAARNLEEGGSLTILATSLVDTGSRMDDMIFEEFKGTGNMEVHLDRKLQERRIF
PAIDIYKSGTRKEDLLFNEEEREASYKIRRVLQKENNIEDVAEKLINLLSKTKNNKEFLQ
VVLKSNLEN
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
gtgcttaaattgaatatagaacaatatgaaaatatgactttagttcagctaaaagagcag
gctaaagaattaggaataaaaaatataagtaaaaagaaaaaaagcgaattaattgaggaa
ttaaaagctgaattcaataaacaaaatagcaatactaaagtaatacataaagatggtgtt
attttaagagaaaaaatatctcaaaaagagcaaggtggaaataaagaaagtttttctggt
gaaagagtagttagaaatagcaataattataataacaataatagtaattataataattca
aatgatgaaggaaaaaaagagcaattaaaggacatgataagttcatcagactctgctaag
ggaatacttgaaatactagataataataattttggttttttaagatgtagaaattattta
acaagtgaagatgatatatatgtttctccatcacaaataagaagatttggattaagaact
ggggacgaagtccaaggtaaagttagaataccaaaggatggagaaaagtttaaagcttta
ctttatgtagagagagtaaatggtgaaagtcctgaaaaagcagttggaagaaaaaaattt
gaagagttaacaccaatatatccaaaagagagattaagacttgagactgaaaatggaaga
gatttaagttcaagacttatggatataatttgtccaataggtaagggacaaagggggatg
atagttgcaccacctaaggctggaaaaacaactcttttaaaaagaatagctcaaaacata
tcaaaaaataatcctgaagttaaacttatagtacttttaatagatgaaagaccagaagaa
gtaacggatatgaagagaagtatagatggagaagtaatctattcaacttttgatgaagaa
ccacaaaaccatgctaaagtttcaagtatagtattagaaagagctaaaagaatggttgaa
caaggaagagatgtagttatcttaatggattctttaacaagattatcaagagcctataac
ttaacagttactccatctggaagaactttatcagggggactagatccaggggcacttata
atgcctaagaaattctttggagcagctagaaatttagaagagggcggaagtttaacaatt
ttagcaacttctttagttgatacaggaagtagaatggatgatatgatttttgaagagttt
aagggtactggaaatatggaggtacacttagatagaaagcttcaagagagaagaatattc
ccagctatagatatttataaatctggtactagaaaagaagatttattatttaatgaagaa
gaaagagaagcttcatataaaataagaagagtattacaaaaggaaaataatatagaggat
gtagctgaaaagcttataaatttattatcaaaaacaaaaaataataaagagtttttacaa
gttgttttaaaaagcaatttagaaaattaa
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