Clostridium perfringens ATCC 13124: CPF_2546
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Entry
CPF_2546 CDS
T00378
Name
(GenBank) RNA pseudouridine synthase family protein
KO
K06183
16S rRNA pseudouridine516 synthase [EC:
5.4.99.19
]
Organism
cpf
Clostridium perfringens ATCC 13124
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cpf03009
]
CPF_2546
Enzymes [BR:
cpf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.19 16S rRNA pseudouridine516 synthase
CPF_2546
Ribosome biogenesis [BR:
cpf03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
CPF_2546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
SPP1_Dit
SYY_C-terminal
SocA_Panacea
HFX_2341_N
S4_2
Motif
Other DBs
NCBI-ProteinID:
ABG84005
UniProt:
A0A0H2YTY0
LinkDB
All DBs
Position
complement(2804968..2805687)
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AA seq
239 aa
AA seq
DB search
MERLDKVLSNLGYGTRKEIKQVVKKGFVTVNDEKVKDSGLQIDPEKDTIVINGEKVEYKK
YIYLMMNKPAGVISATYDKRDETVIDLLYMEDQVFEPFPVGRLDKDTVGLLLLTNDGDLN
HKLISPKYHVDKVYYAEINAPITEKDIKAFENGVTLDDGYKCMSAKLKVIENLEDSSRVE
VTVQEGKYHQVKRMFEARGKKVVYLKRTSFGNLPLDESLEEGEYKELSESELAVLYKNF
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
gtggaaagattggataaggttttatcaaacttaggatacggaacgagaaaagaaataaag
caagttgttaaaaaaggatttgtaacagttaatgatgagaaggttaaagatagtggactt
caaatagatcctgagaaagatacaatagttataaatggggaaaaagtagagtataaaaag
tacatatatttaatgatgaataagccagctggagtaatttcagcaacttatgataagaga
gatgaaactgttatcgacttattatatatggaagatcaagtttttgaaccatttccagta
ggaagacttgataaagatacagtgggattattattattaactaatgatggggatttaaat
cataaattaatttcacctaaataccatgttgataaggtttattatgcagaaataaatgct
cctataacagaaaaagatattaaagctttcgaaaatggtgtaactttagatgatggatat
aaatgtatgagtgcaaagcttaaggttatagaaaatttagaggattcatctagagtagaa
gttacagttcaagaggggaaatatcatcaagtaaaaagaatgtttgaagctagagggaaa
aaggttgtttatttaaaaagaacttcttttggaaatcttccacttgatgaaagtttagaa
gaaggcgaatataaagagctttcagaaagtgaattagcggtactttacaaaaatttttaa
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