Clostridium perfringens ATCC 13124: CPF_2685
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Entry
CPF_2685 CDS
T00378
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPF_2685 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpf03021
]
CPF_2685 (rpoA)
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_2685 (rpoA)
Enzymes [BR:
cpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPF_2685 (rpoA)
Transcription machinery [BR:
cpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPF_2685 (rpoA)
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPF_2685 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
HHH_5
Motif
Other DBs
NCBI-ProteinID:
ABG82675
UniProt:
Q0TMS5
LinkDB
All DBs
Position
complement(2959822..2960769)
Genome browser
AA seq
315 aa
AA seq
DB search
MLEIEKPVIQCVESNDNGTYGKFEIEPLERGYGITLGNALRRILLSSLPGVAPTSVKIDS
VLHEFSTITGVKEDVTEIILNLKMLALTMEGEGPKTIYIDAQGPGVVTGADIKTDGDVEV
VNKDLHIATLDNDGKLYMEIVVNRGRGYVTQNKNKTEDLPLSAIAIDSIYTPVKRVNFSV
QNTRVGQITDYDKLTLEIWTNGTIRIEEAISLSAKILIEHFKLFMTLTDNANDVEIMIEK
EEDKKEKALEMTIEELDLSVRSYNCLKRAGINTVQELAGKSMDDMMKVRNLGKKSLEEVE
RKLNELGLNLRLNDE
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgttagaaatagaaaagccagtaattcaatgtgttgaatcaaacgataacggaacatat
ggtaagtttgagatagaaccattagaaagaggttatggaataactcttggtaatgcatta
agaagaatattactttcttctttacctggagtggctccaacttcagttaaaatagattca
gttcttcatgagttttcaacaataacaggtgttaaagaagatgttacagagataatctta
aatcttaaaatgttagcacttactatggaaggtgaaggaccaaaaactatttatattgat
gctcaaggaccaggtgttgttactggagcagatataaaaacagatggtgatgtagaagtt
gtaaacaaagatctacatatcgctacattagacaacgatggtaagttatatatggaaatc
gtagttaatagaggaagaggatatgttactcaaaacaaaaataaaacagaagatcttcca
ttatcagctattgctatagattctatatacactcctgtaaagagagttaatttctctgtt
caaaatacaagagttggtcaaattactgactatgataaacttacattagaaatttggact
aatggaactataagaatagaagaagcgatttcattatcagctaaaattcttatagagcac
ttcaaattattcatgactttaactgacaacgctaatgatgttgagataatgattgaaaaa
gaagaagataaaaaagaaaaagctttagagatgactatagaagagcttgacttatcagta
agatcatacaattgcttaaagagagcaggtataaacactgttcaagagcttgcgggcaag
agcatggatgatatgatgaaagttagaaacttaggtaagaaatctctagaagaagtagaa
agaaagttaaacgagttaggcttaaatttaagactaaatgacgagtag
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