Clostridium perfringens ATCC 13124: CPF_2721
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Entry
CPF_2721 CDS
T00378
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPF_2721 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpf03021
]
CPF_2721 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_2721 (rpoC)
Enzymes [BR:
cpf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPF_2721 (rpoC)
Transcription machinery [BR:
cpf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPF_2721 (rpoC)
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPF_2721 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABG83537
UniProt:
Q0TMN9
LinkDB
All DBs
Position
complement(2980796..2984332)
Genome browser
AA seq
1178 aa
AA seq
DB search
MFELNNFDALQIGLASPEQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPIKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKSKVRRERMAHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKVLYFASYIVIDPKETSLLKKQLLNEKEYREACDKYGEESFVAGMGAEAIKTLL
SEIDLERTAAELKEELKQSTGQKKVRIIRRLEVVESFKSSGNKPEWMVVDVIPVIPPDLR
PMVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNG
RRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPK
EMALELFKPFVMKKLVEDGVAHNIKSAKRMVERVMPQVWDVLEEVIADHPVLLNRAPTLH
RLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSVEAQAEARFLMLAAGNI
MKPSDGRPVCVPTQDMVLGSYYLTMDKDGAKGEGKYFASFDEVIMAYQLKEVDIHAKINV
KVTKEIDGELKSGIIKTTPGFIIFNECIPQDLGFVNRENPEEMFNLEIDFLITKKSLGKI
IDKCYLKHGPTKTSIMLDNIKATGYHYSSIGAVTVAASDMIVPQKKYELLKEADETVDKI
EKMYRRGLISEDERYERVIEKWTETTEEVADTLMNSLDKFNPIFMMADSGARGSKSQIKQ
LAGMRGLMASPSGKIIELPIRASFREGLDVLEYFISTHGARKGNADTALKTADSGYLTRR
LVDVSQDVIVREHDCGTQNGIYVEEIKEGSEVVEQLAERLTGRYTAEDVFHPETGELLAA
KDTYMDPILAEKIADTGIQKVKIRSVFTCDSKVGVCTKCYGMNMATSYKINIGEAVGIVA
AQSIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAIVSEVAGTVRIEET
KKKRTVYVVTDSGEEYSYDIPFGSRLKVKDGIAIGAGDEITEGSVNPHDIMSIKGVDGAR
EYLLSEVQKVYRLQGVDINDKHLEVVVRQMTRKIKVTEQGDTNLLPGVMIDMFDFRAENE
RVESFGGEKAQGDIVLLGITKAALATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKEN
VIIGKLIPAGTGMMKYRSLKLNTENSNQETETIIEIEE
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgaattaaataattttgatgctttacaaatcgggttagcatctccagaacaaatt
agagagtggtctagaggagaagtaaagaaacctgaaactattaactatagaacgttaaaa
cctgagagagacggattattctgtgaaagaatattcggacctataaaagactgggaatgt
cactgtggaaaatacaaaagagttagatataaaggtattgtatgtgacagatgtggtgtt
gaagtaactaaatctaaagttagaagagagagaatggctcacattgaattagctgcgcca
gtatctcatatatggtatttcaaaggaataccttcaagaatgggattaatccttgatatg
tcaccaagagctttagaaaaagttctatattttgcatcatatatagttatagatccaaaa
gaaacttcattattaaagaaacaacttcttaatgagaaagaatatagagaagcgtgtgac
aaatatggtgaagagagctttgtagctggaatgggtgcagaagctataaaaactttatta
tcagaaatagacttagaaagaactgctgctgaacttaaagaagaattaaagcaaagcaca
ggtcaaaagaaagttagaataataagaagattagaagttgtagaatcattcaaatcatca
ggaaataaacctgaatggatggtagtagatgtaataccagttataccacctgatttaaga
cctatggttcaattagatggaggtagatttgctacttcagatttaaatgatttatacaga
agagttataaatagaaataacagacttaagaagttattagaccttggcgctcctgacata
atagttagaaacgaaaagagaatgcttcaagaggctgtagatgctttaatagataacggt
agaagaggaagacctgtaactggtcctggaaacagacctcttaaatcattatcagatatg
cttaaaggtaagcaaggaagattcagacaaaaccttcttggtaagagggttgactattca
ggaagatcagttatcgttgttggtcctgaattaaaaatgtatcaatgtggtcttccaaaa
gaaatggctttagaattattcaagcctttcgttatgaagaaattagttgaagacggagtt
gctcataacataaagagtgctaagagaatggttgaaagagtaatgccacaagtatgggat
gtacttgaagaagttatagcagaccatccagtattactaaacagagcacctactctacat
agactaggtattcaagcattccaaccagtattagttgaaggtagagctataaaacttcat
ccacttgtatgtacagcatacaacgctgacttcgatggagaccaaatggctgttcacgta
cctttatcagttgaagctcaagcagaagctagattcttaatgcttgcagcaggtaatata
atgaaaccttctgatggtagaccagtttgtgtacctactcaggatatggttcttggttca
tattacttaacaatggataaagacggagctaaaggtgaaggaaaatacttcgcatcattt
gatgaagtaataatggcttaccaattaaaagaagttgatattcatgctaagattaacgtt
aaagttactaaagaaatagacggagagcttaagtcaggaataatcaaaacaactccagga
tttataatattcaatgaatgtatacctcaagacttaggttttgtaaatagagaaaatcct
gaagaaatgttcaatttagaaatagatttcttaataactaaaaagtcattaggaaaaata
atagataaatgttacttaaagcatggtccaactaagacttcaataatgcttgataacata
aaagcaacaggatatcattattcatcaattggagctgttacagttgctgcttcagatatg
atagttcctcaaaagaaatatgaactattaaaagaagctgatgaaactgtagataagatc
gaaaaaatgtatagaagaggtcttatatctgaagatgaaagatatgaaagagttatagaa
aaatggactgagactactgaggaagttgcggatacattaatgaatagtttggataaattt
aacccaatattcatgatggcagactcaggagccagaggatctaagtcacagatcaaacag
ttagctggtatgagaggacttatggcgagtccatcaggtaaaatcatcgagttaccaatc
agagcatcatttagagaaggtcttgacgtattagagtacttcatatctactcacggagct
agaaaaggtaacgccgatacagcacttaagactgctgactcaggttacttaacaagaaga
cttgttgacgtaagccaagatgttatagtaagagaacacgactgtggaactcaaaatggt
atttacgttgaagaaataaaagaaggttcagaagtagttgaacaattagctgaaagatta
acaggaagatatactgcagaagatgttttccatccagaaactggagagcttttagctgca
aaagatacttacatggatccaattttagctgaaaaaatagctgacactggaattcaaaaa
gtaaaaataagatcagtatttacatgtgattctaaggttggagtatgtactaagtgttat
ggtatgaacatggcaacatcatataaaattaatattggtgaagctgttggtatcgtagct
gctcagtcaatcggagaaccaggaacacagcttacaatgagaacattccatacaggtgga
gttgctggagcagatataactcaaggtcttccaagggttgaagagttattcgaagcaaga
aaaccaaaaggattagcaattgtaagtgaagttgcaggtactgtaagaatagaagaaact
aagaagaagagaactgtttatgttgttactgattcaggagaagaatatagctatgacata
ccatttggatcaagattaaaagttaaagatggtatagctattggagctggagatgaaata
acagaaggttcagttaacccacatgatatcatgagcattaagggtgttgatggtgcaaga
gaatacttactttcagaagttcaaaaagtttacagacttcaaggggttgatatcaacgat
aagcacttagaagttgtagttagacaaatgactagaaagataaaagtaacagagcaaggt
gatactaatttattaccaggtgtaatgattgatatgttcgatttcagagctgaaaatgaa
agagttgaaagctttggaggagaaaaagctcaaggagatatagttcttcttggtattact
aaagcagctcttgctacagatagtttcttatcagcagcatcattccaagaaacaacaaga
gttcttactgatgcagcaatcaaaggaaaaattgatcctcttgttggattaaaagaaaat
gttataattggtaagttaattccagcaggtacaggtatgatgaagtatagatcattaaaa
ttaaatactgaaaacagtaatcaagagactgaaacaataattgagattgaagaataa
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