Clostridium perfringens ATCC 13124: CPF_2807
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Entry
CPF_2807 CDS
T00378
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpf
Clostridium perfringens ATCC 13124
Pathway
cpf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CPF_2807 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpf03400
]
CPF_2807 (mfd)
Enzymes [BR:
cpf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CPF_2807 (mfd)
DNA repair and recombination proteins [BR:
cpf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CPF_2807 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
IstB_IS21
RecG_dom3_C
MFD_D3
AAA_14
Motif
Other DBs
NCBI-ProteinID:
ABG83363
UniProt:
A0A0H2YR32
LinkDB
All DBs
Position
complement(3065009..3068497)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAPLLNSEAFQKVKSFMESGNYPVMINGLSDSGKSYFINGIYEESDKPIVVVTHNDIEAR
NIYEDLSFYLPNVYYLPSREIVFYNIDAISGDLRWARLKVIKEMLRSTKKIIVTSIDAFA
ATYTPKELYKSHILKIKVGDEVDFKEISHKLIESGYERLETVEGKGEFSLRGGILDVFPP
NSANPFRIELFGDEVDSIRTFNVESQRSIEKVKRAEIFPAKEVILSKETIEHAIEKMRKE
LSDFENKVSDKEIKERLRKLIERNIESLQENWSFETIDSYLPFFFDKPATLFDYLNNYTF
IIDDAKRCKGKLESTVFEFTENYEAFLERGSILPSQINLSLSAEVVEESFKGNKVINLAP
FGDGGFIESFNKVEVKQSTKSGYQGQLDMLIDDIKENKKNGFRTLILSGTRPRGERLVNT
LRELEIESVYKDEVDEINNGEVVITFGEQNKGFEYPDIKLCLISDKSVFGEGKRAKKAKR
KKSKGVSKIKSFAELKPGDYVVHVNSGIGVYKGIKQIEVQGHKRDYLDIEYSKGDKLYVP
VEQLDLVQKYIGSDSASPKISKLGGNEWQKAKAKVRKSINDIAGDLVKLYAERSTVKGYK
FSKDTQWQKQFEDEFPYEETPDQLSAIEDIKSDMETNKVMDRLLCGDVGYGKTEVAIRAA
FKAVMEGKQVAFLVPTTILAEQHYKNMKKRFAGFPITIDMISRFRTKKQQTETLKALKEG
NVDILIGTHRLVSKDIQFKDLGLLIVDEEQRFGVAQKEKIKSFKKNVDVLTLSATPIPRT
LHMSLTGVRDISVIETPPENRYPIQTYVVEQNDQLIRDAILREINRDGQVYFVHNRVESI
QEVANYIQELVPECKATVIHGQMTERQLETEMIDFMERKYDVLVCTSIIETGIDISNVNT
MIVNDADKMGLSQLYQLRGRVGRSNKVAYAYFLYQRDKVLTEVAEKRLKALKDFTELGSG
FKIAMRDLEIRGAGNMMGSAQHGHMAAIGYDLYCRMLEDTIKIVKGEIEREPVETTVDLK
VDAFIPSSYIKDEIQKIEVYKKIAAIENEEDYEYVREELEDRFSNIPNTVYNLMDIAYIK
SKAKLLNIEEIKEKNEDIIFIFESRERTDKRIFKVLLEEYKDDILIEFGDNPTILYRVKD
KKKEDVLSTFKEMLDKLIALNN
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggctcccttattaaatagtgaggcttttcaaaaggttaaatcttttatggaaagcgga
aattatccagtaatgataaatggtttatctgattcagggaaatcatattttataaatggt
atatatgaggaatcagataagcctatagttgttgttacgcataatgatattgaagctaga
aatatatatgaggatttatctttttacttacctaatgtgtattatttaccttcaagagag
attgtgttttacaatatagatgctatttctggagatttaagatgggcaaggttaaaggtt
ataaaggaaatgctaagaagcactaaaaaaattatagttacgtctatagatgcttttgca
gcaacttatacacctaaggagctttataaaagtcatatattaaaaattaaagttggagat
gaagtcgattttaaagagatttctcataaacttattgaatcaggttatgaaagattagaa
acagttgaaggaaaaggtgaattttcattaagaggaggaatattagatgtatttcctcct
aattctgctaatccttttagaatagagttatttggagatgaagttgattctattagaacc
tttaatgtagaatcacaaagaagtatagaaaaggtaaagagagcagaaatattccctgct
aaggaagttatattaagtaaagaaactatagaacatgctatagaaaagatgagaaaagaa
ctttctgactttgaaaacaaagtttctgataaggaaataaaagagagacttagaaaatta
atagaaagaaatatagaatcattacaagaaaattggagctttgaaactatagatagttat
ctcccatttttctttgataaaccagcaacattatttgattatttaaataattataccttt
ataattgatgatgctaaaagatgtaagggaaagctagaaagtactgtatttgagtttact
gaaaactatgaagccttcctagaaagaggaagcatattaccttctcaaattaatttaagc
ttaagtgctgaggtggtagaagaatcatttaaggggaataaagtaataaatctagctcct
tttggagatggtggatttatagaatccttcaataaagttgaagtgaaacaaagtactaaa
agtggatatcaaggtcaacttgatatgcttatagatgatataaaagagaataagaaaaat
ggatttagaactttaatactttcaggaacaagaccaaggggagaaagattagtaaacact
ttaagagaattagagatagaaagtgtatataaagacgaagttgatgaaataaataatgga
gaagttgtaataacctttggagagcagaataaaggatttgagtacccagatataaaactt
tgtttaatatcagataagagtgtttttggtgagggtaaaagagctaaaaaagctaagaga
aaaaaatcaaaaggtgtatctaaaattaagagtttcgctgagttaaagccaggagactac
gtagttcatgtaaatagtggtataggtgtctataaaggaataaaacaaatagaagttcaa
ggacataaaagagattatttagatattgaatattcaaaaggtgataagttatatgtgcca
gttgaacaattagatttagttcaaaaatatattggatcagatagtgcctctcctaagata
agtaaattaggaggaaatgagtggcaaaaagctaaggctaaggtaagaaagtccataaat
gacatagctggtgacttagtaaaattatatgctgagagatctactgtaaagggatataaa
ttctcaaaggatactcaatggcaaaagcaatttgaagatgaatttccatatgaagaaaca
ccagaccaattatcagctattgaagatataaagagtgatatggaaacaaacaaggttatg
gatagattactttgtggtgatgttgggtatggaaaaactgaggttgccattagagccgca
tttaaggccgtaatggaaggaaagcaagtagcatttttagttcctacaacaatattagca
gagcaacattataagaatatgaaaaaaagatttgcaggattccctataactattgatatg
ataagtagatttaggactaagaagcaacaaacagaaactttaaaagctttaaaagaagga
aatgttgatatattaataggaactcatagacttgtttctaaagatattcagtttaaggat
ttagggcttcttattgtggatgaagagcaaagatttggagtagctcaaaaagaaaagatt
aagagttttaagaagaatgttgatgttcttactttaagtgcaacgccaatacctagaact
cttcatatgtcacttacaggggtaagagatatttctgtaatagagactccaccagagaat
agatatcctattcaaacctatgttgtagaacaaaatgatcaacttattagagatgcaatt
ttaagagaaattaatagagatggtcaagtttattttgttcataatagagttgaaagtatt
caagaggtagctaattatatacaagagcttgttccagagtgtaaggcaactgttattcat
ggacaaatgacagagagacagttagaaactgaaatgatagactttatggaaagaaagtat
gatgttttagtatgtacttccataatagaaacaggaattgatatttcaaatgtaaacaca
atgatagtaaatgacgcagataaaatgggactttctcagctttatcaattaagaggaaga
gttggtagaagtaacaaggttgcttatgcatatttcctatatcaaagagataaggtgtta
actgaggtagcagagaagagacttaaagccttaaaagattttacagagcttggatcagga
tttaaaatagccatgagagaccttgaaataagaggagctggaaatatgatgggatcagct
cagcatgggcacatggcggctataggatatgatttatactgtagaatgttagaagacact
ataaaaattgttaagggtgaaatagaaagagagccagtagagacaactgtagatttaaaa
gtggatgcatttattccttcaagttatataaaagatgaaattcaaaagattgaagtatat
aagaaaattgctgctatagaaaatgaagaggattatgaatatgttagagaggaattagaa
gatagattttctaatataccaaatacagtttataatcttatggacatagcttatataaaa
agcaaagctaaacttttaaatattgaagaaataaaagaaaagaatgaagatataatattt
atatttgaaagtagagaaagaacagataagagaatatttaaagtacttttagaagaatat
aaagatgatatattaattgaatttggagataacccaacaattttatatagagtgaaggac
aagaaaaaagaagatgttttatctacttttaaagagatgttagataagttaatagcttta
aataattaa
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