Chlorobium phaeobacteroides DSM 266: Cpha266_0053
Help
Entry
Cpha266_0053 CDS
T00439
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpha266_0053
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cph03019
]
Cpha266_0053
03400 DNA repair and recombination proteins [BR:
cph03400
]
Cpha266_0053
Enzymes [BR:
cph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cpha266_0053
Messenger RNA biogenesis [BR:
cph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cpha266_0053
DNA repair and recombination proteins [BR:
cph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cpha266_0053
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HEM4
ResIII
DUF6106
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABL64123
UniProt:
A1BCJ6
LinkDB
All DBs
Position
complement(55586..57445)
Genome browser
AA seq
619 aa
AA seq
DB search
MTTDSLNPEKKRGCSDAALYETLRKVFGFRDFRPNQEMIVRTIIEKRDVFAVMPTGGGKS
LCYQLPAVLLPGTCMVISPLIALMKDQVDGARANGIRAAFLNSSLAPEERTLVLRDLLSN
SLDLLYVAPERFTLDQFQEMLKRVNISMAVIDEAHCISEWGHDFRPDYLSLSQLVTLFPD
LPVAAFTATATHQVQRDILDKLALRNPFVVRASFDRANLYYDIRFKENASDQLVALLKQN
SGKAGIIYRTSRKSVNETAALLKAKGFRVLPYHAGLGDDERKQNQEAFIRDEVDVIVATV
AFGMGIDKSNIRFVIHADLPKSIENYYQETGRAGRDGEAARCTLLFSQSDIPKVRFFIDA
MQDETERARALGAFSKVISFASTSVCRRKTLLDYFGETYPHDNCNSCDICLGTREVVDCS
LEAQMLLSAIARTEERFGATHIVDIVTGSANKKIRDFGHDRLKTYGVGKGRDKKFWRQLI
DELLAQKVIAKSEGLYPTIVLLPKAVQILKNEARVEIVRVLEKKSAKAGKQELSGSYDHE
LFDQLRELRKQIADEQGIPPYVVFSDRTLRDMASIFPENNEAMLSVSGVGEVKLDRYGRQ
FLNLINRYRSDHPERNALS
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
gtgacaactgattcactcaaccccgaaaaaaagcggggctgctctgatgcggcgttgtac
gagacccttcgaaaggttttcggattccgtgattttcgacccaaccaggagatgattgtc
aggacaattatcgaaaaaagggatgtttttgccgtcatgccgaccgggggaggaaaatcg
ctctgctatcaacttcctgccgtccttctccctggcacctgcatggtgatcagcccgctt
attgcgcttatgaaagatcaggttgacggcgccagggcaaacggaatacgtgcggccttt
ctcaacagctcgcttgctcctgaagagcgcactcttgttctgcgcgatctgctttcaaac
tcactcgatctgctctatgtcgcgcctgaacggtttacgctcgaccagttccaggagatg
ctcaaaagggtcaatatcagtatggccgtgatcgacgaagcgcactgcatatcggaatgg
ggccacgatttccggcccgactatctttcgctctcgcaactcgtgacgctctttcccgat
cttcctgttgcggcgtttacggcaaccgcaacccaccaggtgcaacgggatattctcgat
aaactcgccctgcgcaacccgtttgtcgtaagagcatcgtttgaccgcgccaatctctac
tacgacatccgtttcaaggaaaatgccagcgatcagcttgtcgccctactgaaacaaaac
tcagggaaagccggcatcatctatcgcaccagccgcaaaagcgtcaacgagaccgccgcg
ctgctgaaggcaaaggggtttcgggtgctcccgtaccatgccggacttggcgatgatgag
cggaaacagaatcaggaagctttcattcgcgatgaggttgatgtgattgtggcaaccgtt
gcgttcggcatgggtatcgacaaatcgaatatccgcttcgtcattcatgccgaccttccg
aaaagcatcgaaaactactaccaggaaaccgggcgagcggggcgcgacggcgaggccgca
cgctgcacgctcctgttttcgcagagcgatattccaaaagtacggttcttcatcgatgca
atgcaggacgaaactgaacgggcaagggcactcggagctttttcgaaagtcatctccttt
gcatcaacatcggtttgtcgaagaaaaaccctgcttgactatttcggcgaaacctatccg
catgacaactgcaactcctgcgacatctgccttggtacgcgcgaagttgtcgactgctcg
cttgaggcgcagatgctgctttcggccatagcccgtaccgaagagcggttcggggctacg
catattgtggatattgtcaccggcagcgccaacaaaaagatccgggacttcggccatgat
cgtctcaaaacttacggagtgggcaaggggcgcgacaagaaattctggcggcagcttatc
gatgaacttcttgcacaaaaagttatcgcaaaatcggagggcctttacccgacaatcgtg
ctcctgccaaaagctgttcagattctgaaaaatgaagcgcgggtggagattgtccgggtt
ctggaaaagaagagcgcaaaagcaggaaaacaggaactttcaggctcatacgatcacgag
ctgttcgatcagctcagagagcttcgcaagcagattgccgacgagcagggaatacctccc
tatgttgtcttttctgaccgcacgctgcgcgatatggcttcgattttcccggaaaacaac
gaggcgatgctctccgtttccggagtaggcgaggtcaagctggatcggtatgggcgacaa
tttctcaaccttataaaccggtacagatccgatcatcccgaacggaatgccttgagttga
DBGET
integrated database retrieval system
