Chlorobium phaeobacteroides DSM 266: Cpha266_0393
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Entry
Cpha266_0393 CDS
T00439
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpha266_0393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cph03021
]
Cpha266_0393
03019 Messenger RNA biogenesis [BR:
cph03019
]
Cpha266_0393
Transcription machinery [BR:
cph03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Cpha266_0393
Messenger RNA biogenesis [BR:
cph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cpha266_0393
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
AAA_25
OB_RNB
NACHT
S1CSD-TOTE-2
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
ABL64452
UniProt:
A1BDH5
LinkDB
All DBs
Position
434054..435343
Genome browser
AA seq
429 aa
AA seq
DB search
MSNNSLAKGLDINVLQKKKVFELHALAKEIGVTAAGLRKEELIFKIIEAQSRNNADSESG
NVMINTGVLQVIPEGYGFLRSANYNYLSSPDDIYVSPSQIKRFNMRTGDTVSGQVRAPKE
GERFFALLKINTIDGNDPEITRERPYFENLTPLFPHDRIKLEIKQSEYCGRIMDIFTPIG
KGQRGLIVAQPKTGKTMLLQMIANAIIQNHPEIYLIVLLIDERPEEVTDMARSVEAEVVS
STFDEDPERHVQVADMVLEKAKRLVEVGRDVVILLDSITRLARAHNTIIPHSGKILSGGI
DANALTKPKRFFGAARNIEEGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELLLDRRL
SERRIFPAIDILRSGTRKEELLFSREELSRTWLLRKYLADKNPIECMEFMREKMADTKDN
KEFFKYMNA
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaacaattcgttagcaaaaggtctggacatcaatgtgctccagaaaaaaaaggtt
tttgagctgcacgctctggcaaaagagattggtgtgactgcagccggtttacgcaaggaa
gagcttatttttaaaatcatagaggcgcagtcgcgaaacaatgccgactctgaaagcggc
aacgtcatgatcaataccggtgttcttcaggttattcctgagggatacggatttttacgc
tcggcaaattataactatctctcttcaccagacgatatctatgtctctccttcgcagatc
aagcggttcaatatgcgaacaggtgatacggtttcaggtcaggttcgagctccaaaggag
ggcgagcgtttttttgctctgcttaaaatcaacaccattgatggtaatgatcctgaaatc
accagagagcgaccatatttcgagaatctgacgccgctgtttcctcatgacaggattaag
ctggagatcaagcaatcggaatattgcggcaggatcatggatatttttaccccgataggt
aaaggtcagcgaggccttatagtcgcacagccgaaaaccggtaaaactatgttgcttcag
atgatagctaacgcgatcattcaaaatcatcccgaaatctatcttatcgtcctgcttatc
gatgaacgtcctgaagaggtgacggacatggctcgaagcgttgaggcggaggttgtcagt
tcaactttcgatgaagatcctgaacgtcatgttcaggttgccgatatggtgcttgaaaag
gctaaaagacttgttgaggtaggcagggatgttgttattctgcttgactccataacaagg
cttgccagagctcacaataccatcattccacattcaggtaaaatcctttcaggcggtatt
gatgccaatgcgctaacaaagccgaaacgattttttggcgcagcccgcaatattgaggag
ggtggaagcctcacaattattgccacagcacttgtcgataccggctcacgtatggacgat
gttatttttgaggagttcaagggtactggcaacatggagcttttactcgatcgcaggctt
tctgaacgacgaatttttcctgcaattgatattcttcgttcaggaacccgtaaagaggaa
cttctgttcagccgggaagagctttcaagaacctggttgctccggaaatatcttgccgat
aaaaacccgatcgagtgtatggagttcatgcgggagaaaatggctgataccaaggataac
aaagagtttttcaaatatatgaatgcctga
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