Chlorobium phaeobacteroides DSM 266: Cpha266_0838
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Entry
Cpha266_0838 CDS
T00439
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Cpha266_0838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cph03400
]
Cpha266_0838
Enzymes [BR:
cph01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Cpha266_0838
DNA repair and recombination proteins [BR:
cph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Cpha266_0838
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
Viral_helicase1
AAA_11
nSTAND3
NTPase_1
RsgA_GTPase
PIF1
NAT10_TcmA_helicase
HHH_2
AAA_28
HHH
AAA_22
UvrD-helicase
ABC_tran
AAA_16
AAA
Pirin
T2SSE
NACHT
ATP_bind_1
ABC_ATPase
AAA_29
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ABL64889
UniProt:
A1BER2
LinkDB
All DBs
Position
complement(951556..953751)
Genome browser
AA seq
731 aa
AA seq
DB search
MPEKTTPAPKHERISGSVERVTFYSEESGFSVLKVRVKGNRDLVSVVGTSPAISPGEFVE
CQGIWHNDRVHGLQFKAEHITVIPPTTASGIEKYLASGMVRGIGAFYAKTLVREFGARVL
DVIENTPEKLLDIPGIGKKRLDIITKSWAEQKAIRDIMVFLQSHGVGVARAFRIYKTYRE
DAIRLVTENPYRLSLDIEGVGFLTADTIADKLGISQDSLIRAEAGVRHMLQELATEGHCA
VPAERLIAESAAMLAVEVDIVTEAVKQQTEKKHLLCEEIDGRQCLYIAPLYRAERGVASG
LHRLMEGPLPWKEVNPDQSIGSVEQKTGLLLSPSQKEAVALVLKSKVSVITGGPGVGKTT
LVNVILSIISSLNVKVSLCAPTGRAAKRLSESTGLEAKTIHRLLEFDPILFNFKRGEGNK
LDTNLVVVDETSMVDVILMNKLLLAIPDKAALLLVGDVDQLPSVGPGAVLSDIITSGVIP
TVRLTEIFRQAAESSIIINAHQINQGKIPTNADGDALTDFYFIASTTPEDIHRKLLTMVT
ERIPKRFGFHPVRDIQVLTPMNRGGLGSRSLNIELQQALNKESMPQINRFGTTFSPGDKV
IQMVNNYDKEIFNGDIGLVVSINTDEGVLSVEYDRRVITYEFSELDEIALAYATSIHKSQ
GSEYPAVVIPLAMQHFTLLERNLLYTAVTRGKKLVVIIGQPKALATAVGNHRANQRLTNL
SRRLAECTETP
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgccagaaaaaacgactcccgcgccaaagcatgaaaggatttccggctctgtcgagcgg
gtaaccttttacagcgaggagtccggattcagcgttctgaaggttcgggtgaaaggcaac
cgcgacctcgtatcggtggtgggaacttcaccggcaatctctcccggtgagtttgtagag
tgccagggcatatggcataacgaccgggtacacgggctccagttcaaggctgagcacatc
acggttattccgccaacaaccgcttcaggaatcgagaaatatcttgcatcggggatggtg
cgcggtattggcgctttttatgcaaaaacgcttgtcagggagttcggcgcaagagtactc
gatgttattgaaaacaccccggaaaagttactcgacattcccggcatcggaaaaaaacgc
ctcgacattatcacaaaatcgtgggccgaacaaaaagccattcgcgacatcatggttttt
ctgcagtcgcacggcgttggcgtagcaagagccttccggatatacaagacatacagggaa
gatgccatccgcctcgtaacggaaaatccctaccgcctttcgctcgatatcgagggagtc
gggtttctcaccgccgacaccatagccgataaactcggcatctctcaggactctctgatc
agggctgaagcgggcgtacgccacatgttgcaggaacttgccaccgaagggcactgtgcc
gtaccggcagaacgacttattgccgaatcggcagccatgcttgctgttgaagtcgatatt
gtcaccgaggcagtaaaacagcagacagaaaaaaaacatcttttgtgtgaagagatcgac
ggccgacagtgcctctacattgctccgctctaccgcgccgaacggggagttgcctcaggg
cttcaccgcctgatggagggcccccttccatggaaagaggtcaatcccgatcagagcatt
ggttcggttgagcaaaaaacaggcctgctgctctccccttcccagaaagaggcggtggct
ctggtactgaaaagcaaggtttccgtcataaccggcgggcccggtgtgggaaaaacaacg
ctggtcaacgttattctttccattatcagctccctgaatgtgaaggtctcgctttgcgct
ccaaccggacgcgcagcaaaacgcctgtcggaatcaaccggacttgaggcaaagacgatc
caccggctgcttgaatttgatccgatactgttcaacttcaaacgtggcgaaggcaacaag
ctcgatacaaaccttgttgtcgtggatgaaacatcgatggttgacgtgattctcatgaac
aaactgcttctggccattcccgacaaagcggcactgcttctggtcggggatgtcgatcaa
ttgccctctgtcggacccggcgcggtgctttcggatatcatcacttcaggagttatacca
acagtacgattgacagaaatcttccggcaggctgcggaatcgagcattattatcaatgcg
caccagatcaaccagggaaaaataccgacgaatgctgatggcgatgcgctgaccgacttc
tacttcattgcatcgacaacgccagaggatattcatagaaaactgctcaccatggtcaca
gaacgcattcctaaacgattcggctttcaccctgtaagagacattcaggtactgacgccg
atgaaccggggcggacttggatcacgctcgctcaatatcgaactgcaacaggcgctcaac
aaggagtcgatgccgcagattaaccggttcggaacgacattctcgcccggcgacaaggtt
atccagatggtaaacaactatgacaaggagatttttaatggcgatatcggtcttgtcgta
tcaataaataccgatgaaggagtcctctctgttgaatacgaccgtcgggtgattacctat
gagttttcggaactcgatgaaatagctcttgcctacgccaccagcatccacaaaagtcag
ggatcagaatacccggctgtcgtcataccgcttgccatgcagcacttcacgctgcttgaa
agaaatctgctctacacagcggtaacacgaggcaaaaaactcgttgtcatcatcggtcag
cctaaagcacttgcaactgctgtagggaaccatagagcgaaccagcgcctgaccaacctt
tcgagaaggcttgctgaatgcacagaaaccccatga
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