Chlorobium phaeobacteroides DSM 266: Cpha266_1126
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Entry
Cpha266_1126 CDS
T00439
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpha266_1126
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cph03019
]
Cpha266_1126
03400 DNA repair and recombination proteins [BR:
cph03400
]
Cpha266_1126
Enzymes [BR:
cph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cpha266_1126
Messenger RNA biogenesis [BR:
cph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cpha266_1126
DNA repair and recombination proteins [BR:
cph03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cpha266_1126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
DEAD_2
Motif
Other DBs
NCBI-ProteinID:
ABL65166
UniProt:
A1BFI9
LinkDB
All DBs
Position
1272900..1274975
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AA seq
691 aa
AA seq
DB search
MIYKSARALELLRIASCNPDAMFRESQEEAIRYIVEGRGRLLVVQKTGWGKSFVYFIATR
LLREGGSGPALLISPLLALMRNQIEAAERMGVRAATINSDNPDDWAEVELSIARNAIDIL
IISPERLANERFSANVLARIASQISILVIDEAHCISDWGHDFRPYYRLLERIVKSLPSNL
RLLATTATANNRVMEDLSEVLGPYLEVLRGDLNRPSLTLQTILLPDQAQRLAWLSEQLAA
LQGHGIIYTLTVRDANTVAAWLKSRGFSVEAYTGETGDRRPEFEQALLHNKVKALVATSA
LGMGFDKPDLAFVIHYQMPGSVVAYYQQVGRAGRALESAYGILLSGREETDITDWFIRSA
FPTRHEVNEVINALENELAGLSVPELLAKVNLSKGRIEKTIALLSLESPAPVAKQGSKWQ
LTAATLGEGFWARADRLTALRRDDQRQMQEYLALPFAEHMGFLIQALDGDPNTVSFPLLP
PLPILADAALVLEAVAFLRRTSLPIEPRLQWPGGGMPQYQVKGKIPVNLQAGHGKTLSVW
GDAGWGELVRQGKYLDNCYSDRLVTACVEMIQKWNPEPAPAWVTCVPSLRHPDLVPDFAQ
RLADALHLPFQKVFVKREERPEQKTMANSTQQARNIDGSLAVNGQTVPESPVLLVDDVVD
SRWTLTVSAWLLRKYGSGVVWPMALAQTGYD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgatatataaatcggcaagggcattggagcttctgaggatcgcttcctgtaatcccgat
gcaatgttccgtgagagccaggaggaagcaattcgatacattgttgaaggccgagggcgg
ttgcttgttgtccagaagactggctggggtaagagttttgtctattttattgcgacacgc
ttgcttcgtgaaggaggaagtgggccagccctcttgatttcaccactgcttgccttgatg
cgaaaccagattgaggctgcggaacgaatgggggtgcgtgctgctaccatcaactcagat
aatccggatgactgggctgaggtggaactgagcatcgcccgtaatgcgattgatattctg
atcatttcacctgaacggcttgcgaatgaacgtttcagtgccaatgttctggctcgaatt
gcttcgcagatttcgatattggttattgatgaagcacactgtatttctgactggggtcac
gactttcggccttactatcgattgctggagcggattgtcaaaagcttgccatcaaatctg
agacttcttgcgaccacggcgacggcaaacaatcgcgttatggaggatctttccgaagtg
cttgggccgtatttggaggtattacgcggtgatttgaatcgtccatcgctcaccttgcaa
accatattgttacctgatcaagcccagcgccttgcctggctttcagaacagcttgcggct
cttcaaggccatggaattatctataccctcaccgttcgtgatgcaaacacggttgcagcc
tggctgaaaagtcgcggtttcagtgttgaagcttatacgggtgaaaccggtgatcgtcga
cctgagtttgagcaggcactgctccataataaggttaaagcgcttgttgcaacctctgcg
cttggaatgggcttcgataaaccggatctggcatttgtgattcactatcagatgccggga
tcggttgttgcctactatcagcaggtagggcgtgccgggcgtgctcttgaatcagcatat
ggcatcttgctgagtggcagggaagagacggatatcacggactggttcatcaggagtgcc
tttccgaccaggcatgaggttaatgaggtcattaatgcgcttgaaaatgagcttgcaggg
ctctcggtacccgaacttctggcgaaagtgaatctgagtaaaggacgtattgagaagact
attgcattactttcgctggaatcacccgcccctgtcgcaaagcaagggagcaagtggcaa
ttgacagcagccacacttggtgagggattttgggctcgtgcggatcgacttaccgcgtta
cgtcgtgatgatcaacgtcaaatgcaggaatatcttgcattgccctttgctgaacacatg
ggttttcttattcaggcgcttgatggcgatccaaataccgttagctttccgttattgcct
ccgttgccgatacttgctgatgcggctcttgttctggaagcggtcgcttttttgcgccgc
accagtttgcccattgaaccaagacttcagtggccggggggcggtatgccacaatatcag
gtaaaaggaaaaatacctgtaaatttgcaggccgggcacggtaaaaccctctcggtttgg
ggtgatgccggatggggcgaactcgtcagacaaggaaaatatcttgacaactgttattct
gacaggttggttactgcttgtgttgagatgattcaaaaatggaatccggaaccagcaccg
gcatgggtgacgtgtgttccatcattgcgtcaccccgatctcgttccggattttgcgcag
cgactggcagatgcgctgcatctgccattccaaaaagtgtttgtcaagagagaagagagg
cccgaacagaaaacgatggcaaacagtacccaacaggcacggaatattgatggttcactt
gcggtcaatggacaaacagtcccggaaagcccggttcttctggttgatgatgtggtggat
tctcgctggacattgacggtgtcagcctggcttttgagaaaatacggaagcggcgtggtt
tggcctatggcgcttgctcaaacaggatacgattaa
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