Chlorobium phaeobacteroides DSM 266: Cpha266_1267
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Entry
Cpha266_1267 CDS
T00439
Name
(GenBank) HhH-GPD family protein
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cpha266_1267
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cph03400
]
Cpha266_1267
Enzymes [BR:
cph01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Cpha266_1267
DNA repair and recombination proteins [BR:
cph03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Cpha266_1267
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
Ogg-HhH
Motif
Other DBs
NCBI-ProteinID:
ABL65300
UniProt:
A1BFX3
LinkDB
All DBs
Position
complement(1445675..1446538)
Genome browser
AA seq
287 aa
AA seq
DB search
MWNKLTTDSDYFYSLINNTVVFIKHISENTIEVYSSDNTIDGLVITDYITRYFTLDVDHD
TCFPHDFQDYYPEVWRLIQPYLSTKILRQDPFSTMITFMCAQGIGMQLIRRQVELIAKNY
GEEITVAFSGKQITLHRFPDPITLARADPEELRYCTNNNRVRAANIVLASKAVAEGRVDL
AGLTDRTIPLALLQETLSGIQGIGYKIADCIALFGLGRFDAFPVDNHVRQYLATWFNMPQ
ASRELSPRNYLLLQRGAQSIFNPDLAGYAGHILFHCWRKEARGMIRF
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgtggaataaattaactactgattctgattatttttattcattaatcaacaataccgtt
gtgtttataaagcacatatcagaaaatactattgaggtatattcgtcagataatacgata
gacgggcttgttattaccgactatattaccagatattttacgcttgatgtcgatcatgac
acgtgctttcctcatgattttcaggattattatcctgaggtatggcgactaatccaaccc
tatctatcaacaaaaattctgcgacaggaccctttttcgacaatgattacgtttatgtgc
gctcagggaatagggatgcagctgatcagaagacaggtcgagttaattgccaaaaattat
ggtgaagaaatcactgttgccttttcaggtaaacagataacccttcaccgttttcctgac
ccgattacgctggcacgtgctgatcctgaagaactccggtactgtacgaacaataaccgt
gtaagggcggcaaatatcgttcttgcttcgaaagcggtggcagagggaagggttgatctt
gccggtcttacagacaggacaattccgcttgctctcctacaggaaactctgtccggtatt
caagggatcgggtacaaaattgccgactgtattgctctgtttggtctgggacgttttgat
gcatttccggtcgataatcatgtcaggcagtatcttgcaacatggtttaatatgccgcaa
gcatccagggaattaagcccgcgcaattatcttcttttgcaacgcggagcacaaagcatt
tttaatccggatcttgcaggttatgctggtcatattctttttcactgctggagaaaagaa
gctcgtggtatgatccgtttttag
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