Chlorobium phaeobacteroides DSM 266: Cpha266_1774
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Entry
Cpha266_1774 CDS
T00439
Name
(GenBank) ATP-dependent RNA helicase CsdA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cpha266_1774
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cph03019
]
Cpha266_1774
03009 Ribosome biogenesis [BR:
cph03009
]
Cpha266_1774
Enzymes [BR:
cph01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cpha266_1774
Messenger RNA biogenesis [BR:
cph03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cpha266_1774
Ribosome biogenesis [BR:
cph03009
]
Prokaryotic type
rRNA helicases
Cpha266_1774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Rsd_AlgQ
AAA_30
Flavi_DEAD
MRP-L47
Motif
Other DBs
NCBI-ProteinID:
ABL65791
UniProt:
A1BHB4
LinkDB
All DBs
Position
complement(2016841..2018610)
Genome browser
AA seq
589 aa
AA seq
DB search
MSEETVIAQNFRSLQLIEPLMKALEEVGYENPTPIQAQTIPLLLEGRDLLGQAQTGTGKT
AAFALPILSNITIARREPQALVLAPTRELAIQVAEAFHRYAEYLKGFHVLPIYGGQDYGI
QLRMLKQGVHVVVGTPGRVMDHMRRGSLNLDGLQCLVLDEADEMLRMGFIDDVEWILDQT
PKGRQVALFSATLPVPIRRIAQKYLNNPAEITIQNKTTTVEAIRQRYWIVGGSHKLDVLT
RILEVEPFDGILIFVRTKTMTLELAEKLQARGYDASALNGDMAQNMRERTVEQLKSGALN
IVIATDVAARGLDVDRISHVINYDIPSDTESYVHRIGRTGRAGRSGEAILFVSPREKNML
YAIEKATRKRIELMELPSTEIINNKRISKFKQRITDTIAAGELDFYSRLIEQYCHEHDVP
ELDAAAALASLLQGETPLLLSAKPERTRDHDDRPRSQSDSGFAKKRKKGEMYGDEGRQRY
RIEVGSTHGVKAGNILGAIINEIGLDPEAVGQISISDTYSSVELPEGMPEEVFHELRKVR
VCGRQLRLTKIEGQDSASSYAPKKNFRKSAKPEKDQQAFFTGQKKKRRN
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagagaccgttattgcccagaattttcgcagtttacagttaatcgagccttta
atgaaggcgcttgaggaggtgggttacgaaaacccgacgcctattcaggctcaaactatt
ccgttgcttctcgaaggtcgcgatcttctcgggcaggcgcagacaggaaccggcaaaact
gccgcttttgcgctaccgattctttccaatattactatcgcaagacgggagcctcaggcg
cttgtgcttgctcctacgagggaacttgccattcaggtggccgaagcattccatcgttat
gccgaatatcttaaagggtttcatgtgctgcctatttatggcggacaggattatggtatt
cagcttcgtatgctcaaacagggcgtgcatgtcgtggtcggtacgccgggccgcgtgatg
gatcatatgcgacgcgggtcgttgaatcttgacgggttgcagtgtcttgtgcttgacgaa
gctgatgaaatgcttcgcatgggctttatcgatgatgtggaatggattctggatcagacg
ccaaaaggtcgccaggttgcgttgttctctgcaaccctgccggtgcctattcgccgtatt
gcccagaagtacctcaataatccggcagagatcaccattcagaacaaaaccacgacggtt
gaggctattcgtcagcggtactggattgttggcggtagccacaagcttgatgtcctgaca
agaattcttgaagtcgagccttttgacggtattcttatttttgtacgaaccaagaccatg
acgcttgaactcgccgaaaagctccaggccagagggtatgacgcttctgctctgaatggt
gatatggcgcagaatatgcgtgaaaggactgtcgagcagttgaagagcggtgcgctcaat
attgttatcgcaaccgatgttgccgcccgaggtctggatgttgatcgaatcagtcatgtt
atcaattacgatattccttcggataccgaatcctatgttcaccgtatcggacgtacgggc
cgcgcagggcgaagtggcgaggcgattctttttgtctctccgcgtgagaaaaatatgctg
tatgcgattgaaaaagctactcgaaagagaatagagcttatggagctgccttcaacggag
attatcaacaacaagaggatatccaagttcaaacagcgcatcaccgataccattgctgcc
ggtgaacttgatttttattcacggcttatcgagcagtattgccatgagcatgatgtgccc
gaacttgatgctgccgctgcacttgcctcgctgcttcagggtgaaacgccgttgcttctt
tcagcaaaacctgaaagaacaagggatcatgacgatcgcccaaggtcgcaaagcgattct
ggattcgcaaaaaaacgtaaaaaaggcgagatgtacggcgacgagggcagacagcggtat
cgcattgaggttggcagtactcacggtgtcaaggccggcaatattcttggcgctattatc
aatgagattggccttgatcctgaagcggtagggcagatatcgatttccgatacctacagt
tcagtagagcttccggaaggtatgcccgaagaggtctttcatgaacttcgtaaagtcagg
gtatgtggccgtcaattgagacttacaaaaatagaagggcaggacagcgcctcttcgtac
gctccaaaaaagaatttcaggaaatccgcaaaaccggagaaagaccagcaggcatttttt
accggacagaaaaaaaagcgacgtaactga
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