Clavibacter phaseoli: FGI33_05475
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Entry
FGI33_05475 CDS
T08435
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
cpha
Clavibacter phaseoli
Pathway
cpha03030
DNA replication
cpha03430
Mismatch repair
cpha03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FGI33_05475 (holA)
03430 Mismatch repair
FGI33_05475 (holA)
03440 Homologous recombination
FGI33_05475 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpha03032
]
FGI33_05475 (holA)
03400 DNA repair and recombination proteins [BR:
cpha03400
]
FGI33_05475 (holA)
Enzymes [BR:
cpha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FGI33_05475 (holA)
DNA replication proteins [BR:
cpha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FGI33_05475 (holA)
DNA repair and recombination proteins [BR:
cpha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FGI33_05475 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
Motif
Other DBs
NCBI-ProteinID:
UKF36567
LinkDB
All DBs
Position
complement(1182959..1183987)
Genome browser
AA seq
342 aa
AA seq
DB search
MATRTSRSTAAKPSAAIPQLSWDAVRPAPIVLVSGTEALLADRAMRRLRDILTAEDPRIE
VSDIEADSYAPGELITLASPSLFAEPRLIRVVNVEKCSDQFLLDAVAYLDSPADDTYVVL
RHAGGVRGKKLLDAVRAGTGGGIEIVCAELKKDSEKHDFAVAEFRAAKRSITPGAVRQLV
AAFQDDVSELASACQQLISDTAHEITEVTVDQYYGGRVEINAFAVADSAIAGRSGEALVL
LRHALTSGADPVPLIAAFAMKIRTMAKVSGVSGASGQLASKLGMAPWQVDRARRDLQLWD
DAGLGRAIEALAEADAQVKGGGRDPVYSLERMVRTIASRGRD
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaggacgtcccgcagcacggcggcgaagccctccgcggccatcccgcagctc
tcgtgggacgcggtgcggccggcgcccatcgtcctcgtgtccggcaccgaggccctcctc
gccgaccgcgcgatgcggcgcctccgcgacatcctcacggcggaggacccgcgcatcgag
gtctccgacatcgaggccgactcgtacgcgcccggcgagctcatcacgctggccagcccg
tccctgttcgcggagccgcggctcatccgcgtcgtgaacgtggagaagtgctccgaccag
ttcctgctcgacgccgtggcctacctcgactcgccggccgacgacacctacgtggtgctc
cggcacgccgggggagtgcgcggcaagaagctgctcgacgccgtgcgcgcggggaccggc
ggtggcatcgagatcgtgtgcgccgagctcaagaaggacagcgagaagcacgacttcgcc
gtcgccgagttccgtgccgcgaagcgctccatcacgccgggcgccgtgcggcagctcgtg
gcggcgttccaggacgacgtgagcgagctggcgtcggcgtgccagcagctcatctcggac
accgcccacgagatcaccgaggtcacggtcgaccagtactacggcggtcgcgtcgagatc
aacgcgttcgcggtcgcggactcggcgatcgccggccgcagcggcgaggcgctcgtgctg
ctccggcacgcgctcacctcgggcgcggatccggtgccgctcatcgcggcgttcgccatg
aagatccgcacgatggcgaaggtgtcgggcgtgtcgggtgcctcgggccagctggcgtcc
aagctcggcatggcgccgtggcaggtcgaccgcgcccggcgcgacctgcagctgtgggac
gacgcgggtctcggccgggccatcgaggccctcgccgaggcggacgcgcaggtcaagggc
ggcgggcgcgatcccgtctactcgctggagcgcatggtgcgcaccatcgcctcgcgcggc
cgcgactga
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