Clavibacter phaseoli: FGI33_07180
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Entry
FGI33_07180 CDS
T08435
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpha
Clavibacter phaseoli
Pathway
cpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGI33_07180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpha03019
]
FGI33_07180
03009 Ribosome biogenesis [BR:
cpha03009
]
FGI33_07180
Enzymes [BR:
cpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FGI33_07180
Messenger RNA biogenesis [BR:
cpha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGI33_07180
Ribosome biogenesis [BR:
cpha03009
]
Prokaryotic type
rRNA helicases
FGI33_07180
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
adh_short
HEM4
Cas3-like_C_2
AAA_22
HTH_CLF_N
UvrA_inter
AIRS_C
Motif
Other DBs
NCBI-ProteinID:
UKF36883
LinkDB
All DBs
Position
1550476..1552236
Genome browser
AA seq
586 aa
AA seq
DB search
MSTDDTASTPDADAAPRTTFSDLGLSDQVLKALKDVGYETPSAIQAATIPSLLSGRDVLG
VAQTGTGKTAAFALPILSNLDVSQKTPQALVLAPTRELALQVCEAFERYASGMRGVHVLP
VYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLDKGTLDLSQLKFLVLDEADEMLKMGFAE
DVETILADTPKSKQIALFSATMPAQIRRISGKYLQDPEEITVKNKTTTSANTTQRYLMVS
YPQKVDALTRILETENFEGMIVFVRTKNETETLAEKLRARGYAAAAISGDVAQAQRERTV
EQLKSGKLDILVATDVAARGLDVDRISHVVNYDIPIDTESYVHRIGRTGRAGRSGAAISF
VTPRERRLLTAIERATRQPLTEMRMPSAEDVNVTRLTRFDDAITSALQDRERLDAFRDIV
GHYVNHHDVVESDVAAALAIVAQGDTPLLLSADDLRPPRVERERRDDRPGRDGDDRGERR
ARPARGSGNMATYRIDVGRRHRVEPRQIVGALANEGGFSREDFGHIDIRPDFSLVELPAG
LAQDKLDKLASTVINGRPIDIRPDRGGPRAAERGAAPERRGRKPRD
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgagcactgacgacaccgcatccacccccgacgcggacgccgccccccgcacgaccttc
agcgacctcggtctctccgaccaggtgctcaaggcactcaaggacgtgggctacgagacg
ccctccgcgatccaggccgccacgatcccctccctgctgtccggccgcgacgtcctcggc
gtcgcccagaccggcaccggcaagacggccgcgttcgcgctgccgatcctctccaacctc
gacgtgtcccagaagaccccgcaggccctcgtgctcgcgcccacccgcgagctcgcgctc
caggtgtgcgaggcgttcgagcgctacgcgtccggcatgcgcggcgtgcacgtgctgccc
gtctacggcggccagggctacggcgtgcagctgtcggcgctccgccgcggcgtgcacgtg
gtcgtcggcacccccggccggatcatggaccacctcgacaagggcaccctcgacctctcg
cagctgaagttcctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgcggag
gacgtggagacgatcctcgcggacaccccgaagtcgaagcagatcgcgctgttctcggcg
acgatgcccgcgcagatccgccgcatctcgggcaagtacctgcaggaccccgaggagatc
acggtcaagaacaagaccacgacctccgcgaacaccacgcagcggtacctgatggtgtcg
tacccgcagaaggtcgacgccctcacgcgcatcctcgagaccgagaacttcgagggcatg
atcgtcttcgtccgcacgaagaacgagacggagacgctcgccgagaagctgcgcgcccgc
gggtacgcggcggccgccatctcgggcgacgtcgcgcaggcgcagcgcgagcgcacggtc
gagcagctgaagtccggcaagctcgacatcctcgtggcgaccgacgtcgcggcccgcggg
ctcgacgtcgaccggatcagccacgtcgtcaactacgacatccccatcgacaccgagtcg
tacgtgcaccgcatcggccgcacgggtcgcgcaggacgcagcggcgcggcgatcagcttc
gtcacgccgcgcgagcgccgcctgctcaccgccatcgagcgggccacgcgccagccgctg
accgagatgcgcatgccgagcgcggaggacgtgaacgtcacgcgcctcacgcgcttcgac
gacgccatcacatcggcgctgcaggaccgcgagcgcctcgacgcgttccgcgacatcgtg
ggccactacgtgaaccaccacgacgtcgtcgagtccgacgtggccgccgcgctcgcgatc
gtggcgcagggcgacaccccgctcctcctctcggccgacgacctccgcccgccgcgcgtc
gagcgcgagcgccgggacgaccgcccgggccgcgacggcgacgaccgcggcgagcgtcgc
gcccgtcccgcgcgcggcagcgggaacatggcgacgtaccgcatcgacgtcggccgccgc
caccgcgtcgagccgcgccagatcgtgggcgcgctcgccaacgagggcggcttcagccgc
gaggacttcggccacatcgacatccgccccgacttctcgctcgtcgagctgccggcaggg
ctcgcgcaggacaagctcgacaagctcgccagcacggtcatcaacggccggccgatcgac
atccgccccgaccgcggcggcccccgtgccgccgagcgcggcgcggccccggagcgtcgc
gggcggaagccccgcgactga
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