Clavibacter phaseoli: FGI33_09365
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Entry
FGI33_09365 CDS
T08435
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpha
Clavibacter phaseoli
Pathway
cpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGI33_09365 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpha03019
]
FGI33_09365 (recQ)
03400 DNA repair and recombination proteins [BR:
cpha03400
]
FGI33_09365 (recQ)
Enzymes [BR:
cpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FGI33_09365 (recQ)
Messenger RNA biogenesis [BR:
cpha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGI33_09365 (recQ)
DNA repair and recombination proteins [BR:
cpha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FGI33_09365 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
UKF37276
LinkDB
All DBs
Position
complement(2043033..2044919)
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AA seq
628 aa
AA seq
DB search
MTSTPPVPAGTAPSDGALAPALERLGTVFGYDAFRGDQQEIVEHVIGGGDALVLMPTGGG
KSLCYQIPSLVREGTGVVISPLIALMQDQVDALRAVGVRAAFLNSTQDLETSREVERALL
DGDLDLLYLAPERLILDRMGRLLDEARIALFAIDEAHCVSQWGHDFRKDYLALSMLQERW
PEVPRIALTATANEATHADITARLGLQDARHFVSSFDRPNIRYRIVPKAEPRKQLVDLIR
NEHAGDAGIVYCLSRKTVEQTAEALNKQGITALPYHAGLDAAVRQRNQARFLREDGIVMC
ATIAFGMGIDKPDVRFVAHIDLPKSIEGYYQETGRAGRDGLPSTAWLAYGLQDVVQQRRM
IDQSEGDAQHRRRLSQHLDAMLALCETVGCRRVQLLRYFGEETGPCGNCDTCLEPVETWD
ATVPSQKLLSTIVRLQRERNQRFGAAHLIDILLGNETDRVRQQGHDQLATFGIGGELTDV
QWRGVVRQLLAQGLLGVSDDGYGTLVITPGSGDVLTGSRQVPMRQEPERLVRGRGTRTTR
AKGGQVVDLPEEAQGLFEALRTWRSEQAKEQGVPAYVVFADVTLREVATVRPQDLGQLAG
ITGVGQKKLDTYGEGLLAVVAAGSAAAE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgacctccacccctcccgttcccgccggcacggcgccctccgacggcgccctggccccc
gccctcgagcgcctcggcacggtgttcgggtacgacgccttccgcggcgaccagcaggag
atcgtcgagcacgtcatcggcggcggcgacgcgctggtcctcatgcccacgggcggcggc
aagtcgctctgctaccagatcccgagcctcgtgcgcgagggcacgggcgtcgtcatctcg
ccgctcatcgcgctcatgcaggaccaggtcgacgcgctgcgcgccgtcggcgtccgggcc
gcgttcctcaactccacgcaggacctcgagaccagccgcgaggtcgagcgggccctgctc
gacggcgacctcgacctgctctacctcgcgcccgagcgcctcatcctcgaccggatgggg
cgcctcctcgacgaggcgcgcatcgccctcttcgccatcgacgaggcgcactgcgtctcc
cagtggggccacgacttccgcaaggactacctcgcgctgtcgatgctgcaggagcgctgg
ccggaggtgccgcgcatcgcgctcaccgccacggccaacgaggccacgcacgccgacatc
accgcgcgcctgggcctgcaggacgcgcgccacttcgtctcctcgttcgaccgcccgaac
atccgctaccgcatcgtgcccaaggcggagccgcgcaagcagctggtcgacctcatccgg
aacgagcacgcgggcgacgccggcatcgtctactgcctgtcgcggaagaccgtcgagcag
acggcggaggcgctgaacaagcagggcatcaccgcgctcccgtaccacgcgggcctcgac
gcggccgtccggcagcgcaaccaggcgcgcttcctccgcgaggacggcatcgtcatgtgc
gccaccatcgcgttcggcatgggcatcgacaagcccgacgtgcgcttcgtcgcgcacatc
gacctgccgaagtccatcgagggctactaccaggagacggggcgcgcgggccgcgacggc
ctgccctccacggcctggctcgcctacggcctgcaggacgtggtccagcagcgccgcatg
atcgaccagtccgagggcgacgcgcagcaccgccgccggctctcgcagcacctggacgcg
atgctcgcgctgtgcgagacggtcggctgccggcgcgtgcagctcctgcgctacttcggc
gaggagacgggtccgtgcggcaactgcgacacgtgcctcgagcccgtcgagacgtgggac
gccacggtcccgtcgcagaagctgctgtccacgatcgtccggctgcagcgcgagcggaac
cagcgcttcggcgccgcgcacctcatcgacatcctgctcggcaacgagaccgaccgcgtc
cgccagcaggggcacgaccagctcgccaccttcggcatcggcggcgagctcaccgacgtg
cagtggcgcggcgtcgtccgccagctcctcgcgcagggcctgctcggcgtgagcgacgac
ggctacggcaccctcgtcatcaccccgggcagcggcgacgtgctcaccggatcccggcag
gtgcccatgcggcaggagcccgagcgcctcgtgcgcggccgcggcacccgcaccacccgg
gcgaagggcggccaggtggtcgacctccccgaggaggcgcaggggctcttcgaggcgctc
cgcacgtggcgctcggagcaggccaaggagcagggcgtccccgcgtacgtcgtgttcgcc
gacgtcacgctgcgcgaggtcgcgacggtgcgcccgcaggacctcggccagctcgcgggc
atcacgggggtcggccagaagaagctcgacacctacggcgaggggctgctcgcggtcgtc
gccgccggatccgccgcggccgagtag
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