Corynebacterium phocae: CPHO_04955
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Entry
CPHO_04955 CDS
T05007
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cpho
Corynebacterium phocae
Pathway
cpho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPHO_04955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpho03019
]
CPHO_04955
03016 Transfer RNA biogenesis [BR:
cpho03016
]
CPHO_04955
Enzymes [BR:
cpho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CPHO_04955
Messenger RNA biogenesis [BR:
cpho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CPHO_04955
Transfer RNA biogenesis [BR:
cpho03016
]
Prokaryotic type
tRNA degradation factors
CPHO_04955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
KH_1
S1
KH-I_KHDC4-BBP
RNase_PH_C
KH_2
Methyltransf_7
ANAPC8
Motif
Other DBs
NCBI-ProteinID:
APT92348
UniProt:
A0A1L7D2K5
LinkDB
All DBs
Position
1126983..1129223
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AA seq
746 aa
AA seq
DB search
MSENNAVEFIVDEEFGITEAIATLDNGDFGTRTIRFETGQLARQAGGSVTTYLDDDTMLL
TTTTASNQPREGFDFFPLTVDVEERMYAAGKIPGSFFRREGRPSTEAVLTCRLVDRPLRP
TFVKGLRNEVQVVITVMSMNPEEFYDVVAINGASAATQLSGLPVSGPVGGVRMALIADDK
HPKGQWVAFPNHAQHDQALFEMVVAGRLVDKGGKQDVAIMMVEAGAGNNVIQRIKEGAPA
PKEATVAAGLEAAKPFIETLCKAQAGLAERAAKETQEFPLFPPYSDDVYAAVEKKAAKKL
EELMTIAGKQDRDDATNEHMATVEEALLDRFEELDDASKQIRNAYNSLMKAIVRKKILNE
GFRIDGRSVTDIRDLAVEVELIPRAHGSALFERGETQILGVTTLDMLKMEQHIDSLSPDS
SKRYMHHYNFPPYSVGETGRVGSPKRREIGHGALAERALVPVLPTREEFPYAIRQVSEAL
GSNGSTSMGSVCASTLSLFNAGVPLKAPVAGIAMGLVSGEVKGKEKFVALTDILGAEDAF
GDMDFKVAGTSEFITALQLDTKLDGIPSKVLADALEQARDARAAILDTMETVIDSPDEMS
ALAPKITSVKIPMNKIGELIGPKGKTINLITEETGADISIEEDGTVYISAATGEAADAAI
ERVNGIANPQLPTVGERYLGTVVKTVAFGAFISLTPGSDGLMHISKIGGDERIEKVEDVY
NVGDKVQVEIADIDNRGKISLIPVED
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaaataacgctgttgaatttattgtcgacgaagagttcggcatcactgaagcc
attgccaccctggacaacggggactttggcactcgcaccatccgcttcgagactggccag
ctagcgcgccaggccggcggatctgtcaccacctatttggatgatgacaccatgctgctg
accaccaccactgcgtccaaccagccgcgcgaaggctttgatttcttcccgctgaccgtg
gacgttgaggagcgtatgtacgcagccggcaaaatcccgggctcgttcttccgccgcgaa
ggccgcccctcgactgaagctgtattgacctgccgtctggtagaccgcccgctgcgccca
acctttgttaaaggcttgcgcaacgaagtccaggttgtcatcacggtcatgtccatgaac
cctgaagagttctatgacgttgtggctatcaatggtgcctctgctgcaacgcagctgtct
ggtctaccagtttccggccctgtgggcggcgtacgcatggcgcttattgccgatgataag
caccccaagggccagtgggtagcgttccccaaccacgcccagcacgatcaagctctcttc
gagatggttgttgcaggccgcctggtagacaagggtggcaagcaagacgttgccatcatg
atggtggaggctggagctggcaacaacgtcatccagcgcatcaaggaaggtgccccggct
cccaaggaggccaccgtggcagctggtcttgaggccgctaagcctttcattgagacactg
tgcaaggcccaagctggtctggcagagcgtgcggctaaagaaacccaggaattcccactg
ttcccgccgtattccgatgatgtctacgcggcagtggagaagaaggctgcgaagaagctc
gaagagctgatgaccattgccggcaagcaggaccgcgatgacgccaccaatgagcatatg
gccaccgtggaagaagctctcttggaccgctttgaggaattggatgacgcttccaagcaa
atccgcaatgcgtacaactccctgatgaaggccatcgtccgtaagaagatcctcaacgag
ggcttccgtattgacggccgtagcgttaccgacattcgtgaccttgcggttgaggttgaa
ctcattccgcgcgcgcacggttccgcgctgttcgagcgcggggagactcaaatcctgggc
gtaaccaccctggacatgttgaagatggagcagcatattgactcgctgtcgcctgactca
tctaagcgctacatgcaccactacaacttccctccttactccgtaggtgagactggccgc
gtgggctcgcccaagcgccgcgaaatcgggcacggtgcgcttgctgagcgcgctttggtt
ccggttcttcctacccgtgaggaattcccttacgccatccgccaggtatctgaggctcta
ggatccaacggttctacctccatgggttccgtctgcgcttccacgctgtctctgtttaac
gccggcgttccgctgaaggcacccgtggctggtatcgctatgggacttgtctccggtgag
gtcaagggcaaggagaagttcgttgcgctgaccgacatccttggtgcagaagacgcattc
ggtgacatggacttcaaggtcgctggtacctccgagttcatcaccgctttgcagctcgac
accaagttggacggcatcccctctaaggtgctggcggatgccctcgagcaggcacgtgat
gctcgtgccgctatcttggacaccatggaaaccgtcatcgactccccggatgagatgtcc
gctttggcaccgaagattacctcggtgaagattccaatgaacaagattggtgagctcatt
ggccccaagggcaagaccatcaacctgattacggaagaaaccggcgctgatatttccatc
gaggaagacggcaccgtctacatctccgcagccactggtgaggcagccgacgccgccatc
gagcgcgtcaacggcattgctaacccgcagctaccaaccgttggtgagcgctacctaggt
acggttgtcaagaccgttgcctttggtgctttcatctccttgactccagggtcagacggc
ttgatgcacatctccaagattggcggagatgagcgcattgagaaggtagaggacgtctac
aacgtgggcgacaaagtccaggtagaaatcgcggacattgacaaccgcggcaagatctcc
cttattccagtagaggactaa
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