Corynebacterium phocae: CPHO_05170
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Entry
CPHO_05170 CDS
T05007
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpho
Corynebacterium phocae
Brite
KEGG Orthology (KO) [BR:
cpho00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpho03019
]
CPHO_05170
Enzymes [BR:
cpho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CPHO_05170
Messenger RNA biogenesis [BR:
cpho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CPHO_05170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_19
DEAD
AAA_22
nSTAND3
AAA_25
ResIII
NACHT
ABC_tran
T2SSE
SLFN-g3_helicase
TsaE
DUF1104
AAA_23
HA2_N
AAA_16
DUF4312
Motif
Other DBs
NCBI-ProteinID:
APT92385
UniProt:
A0A1L7D2R4
LinkDB
All DBs
Position
complement(1175130..1179086)
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AA seq
1318 aa
AA seq
DB search
MTNTPPQASQRPQRQTSQPERTAPSRDALHARLEQVSLADARGFHRRLRKARSAAARLAI
AQDMDAAQRRVEKISAAIPDITYPETLPVSARKDDIAAAIRDNQVVIIAGETGSGKTTQI
PKICLELGRGRRGFIGHTQPRRLAARTVAERIADELGQKIGQTVGYAIRFDDRVSPTTAV
KLMTDGILLAEMQRDRFLNAYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSA
TIDPEKFAAHFADSKGKPAPIVEVSGRTYPVEIRYRPLEFEVNGKVVDQDPMDGLVAAIE
ELMTEGPGDILCFFAGERDIRDAMEAIDAKKWRGVEVTPLFGRLSNQEQHRVFSPHSGRR
IVLATNIAETSLTVPGIHYVVDMGTARISRYSTRTKVQRLPIEPISQASANQRSGRSGRV
ADGIAIRLYSEEDFLSRPEFTDPEILRTNLASVILQMISLRLGDIAEFPFVQPPDNKAIR
DGLLLLHELGALRSDSAEKDGLPVLSAIGRDLAKIPVDPRMARMLVEGNFTGSLDDVIVI
VAAMTIQDVRERPLEKQAQADQAHARFKDKTSDFLGMLKLWDYVSQSRDEQSGNAFRKKM
KAEYLHYMRIREWFDLVRQLRDVTRQMGWSTKDNVVTERRPDDIHQALLSGLLSNIGARE
GNSKEFIGARNTRFLVFPGSALAKKPPEFLMAAELVETSRLWARDVAAIDPAWVEKLGAN
LLRHNYSEPTWSRKRAAAVATQRSTLYGVPIVADRTVPYHRVDPVAARDMFIREALIEGE
WNAHHKFLQHNAQALDDASGVEDKARRRGIIADEDTLFEFYDSRLPQKITTGRHFDSWWK
KARQENPELLNFDPNALIEDDHDVTEEAFPDRWLKGSIDYDLEYHFEPGTPMDGVTILIP
VPLLAGMDTESFDWLVPGMRLELVTELIRTLPKAIRRTVVPAPDFAERALPKLIAYESPL
KQQLADVLRELGAQGINASDFRPSQLPEHLKMNYAAVDKRGKIIDSDRDLAALVQRQAGH
IKASVSRVGRKAESKAVKKWTPDNLGKVEETVATVVDGHEVVAYPALVATPEGVELKVHP
TKAAADAAMLTTTLTLLLREITVQPGPMVKGLPLQQRVAIDNYPHGGAQGLVDDARVAAI
RDLMMEKGGPVRDPEEFARLLAAVKPEVASRVRRTVVALAPAMVEFANAKSELAKWEGPA
IDDMRHQLDFLLPKNAVTIHGLIHLQHLPRYIQAINIRLEEMAIDPDKDADRQDEVHEAH
AYLTNKLRNLPAGREKTKEAKEIKWMIEELRVSLFAQRLGTARPISLRRVQKAVDKLR
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgactaacactcccccacaggcatcccagcgcccacaacgacagacatcgcaacccgaa
cgcaccgccccctcccgcgacgcccttcacgcccggctagagcaagtctcacttgccgac
gcccgtggtttccacaggcggctgcgcaaggctcgctcggctgctgcgcgcttggctatt
gcacaagacatggacgccgcccagcgccgcgtcgaaaaaatttctgccgcgattccggac
atcacctacccggagacactgccggttagcgcgcgcaaggacgatatcgctgctgccatc
cgcgataaccaggtggttatcattgccggtgagaccgggtccggcaagaccacccaaatc
cccaagatttgtctggaactaggccgcgggcgccggggatttattgggcacacccagccg
cgccgtttggcagcccgcaccgtcgctgaacgcattgcggatgagctgggacaaaagatt
ggccagaccgtgggttacgccatccgttttgatgaccgggtttcccccaccaccgctgtg
aaacttatgaccgacggcatcttgctggcggaaatgcagcgcgataggttcctcaacgcc
tacgacaccatcatcatcgacgaggcccacgagcgttcactaaacattgacttcctcttg
ggatatctcaagcaacttctgcctaagcgtccggaccttaaggtcatcatcacctccgcg
accatcgacccggagaaattcgccgcgcactttgcggattctaagggtaaaccggccccc
atcgtagaggtttccggccgcacctatcccgtggaaattcgctaccggccgctggagttc
gaggtcaacgggaaggtagtagaccaagaccccatggacgggctggtagcggccatcgaa
gagctgatgactgaaggccccggagacatcctgtgcttctttgccggcgaacgcgatatc
cgcgacgccatggaagctatcgacgccaagaagtggcgtggcgtggaggtcacccctttg
ttcggcagactttctaaccaagaacagcaccgagttttttctcctcactcgggccggcgg
attgtcctggccacaaacatcgcagaaacctccctaaccgtgccgggaatccactacgtg
gtggatatgggcacggcccgcatttcgcggtattccacccgcaccaaggtccagcggctg
cccattgagccgatttctcaggccagcgccaaccagcggtccgggcgctccggccgcgtt
gctgacggcatagccatcaggctgtactcggaagaagatttcctatcccgcccggaattc
acagatccggagattttgcgcaccaacctagccagcgtcatcttgcagatgatttccttg
cgcttgggcgatattgctgaattccccttcgtgcaacctccagataacaaggctatccgc
gacgggctgctgctgctccacgagttgggtgcgctgcggtctgatagcgcagagaaagac
gggcttccggtactgtccgctattggccgcgacctggccaaaatccctgtggatccccgc
atggcccgcatgttggtggagggaaacttcaccggcagcctggatgatgtcatagtaatc
gtggccgccatgaccatccaggatgtgcgcgaacgcccgctggaaaagcaggcccaagca
gaccaagcgcatgcccgtttcaaggacaagacctccgatttccttggcatgctcaaactc
tgggattacgtttcccagtcccgcgatgagcaatccggcaacgccttcaggaagaagatg
aaggccgaatacctccactacatgcgtatccgcgagtggtttgacctggtacgccagctc
agggacgttacccgtcaaatggggtggtctaccaaagacaatgtggtaactgagcgccgg
ccagatgatattcaccaggccctactttccggactactgtccaacattggtgcccgggag
ggcaattccaaggagtttattggcgcgcgcaacacccgtttcctggtattcccgggctcc
gcactggccaagaagccaccagaattcctcatggctgcggagctggtggagacttcgcgg
ctctgggcacgcgacgtagcagcgattgatccggcctgggtagaaaagctgggcgcaaac
ctgttgcgccataattactcagagcccacctggtcacgcaagcgggcagctgccgtggcc
acccagcgctctacgctctacggggtaccgattgttgctgacagaactgtcccctaccac
cgggtggatcccgttgccgcccgggacatgtttatccgcgaggcgctcattgagggagag
tggaacgcccaccacaaattccttcagcacaatgcgcaagcccttgacgacgcctccgga
gttgaggacaaggcgcgccggcgcggcatcattgccgatgaagacacgctgtttgagttc
tacgactcccgcttgccccaaaagatcaccaccgggcgccactttgactcgtggtggaaa
aaagcccggcaggaaaatcctgagctcctcaactttgatcccaacgcccttattgaagac
gatcacgatgtcacggaggaggcgttccccgaccgctggctgaagggctccattgactac
gacctggagtaccactttgaaccgggcacgcctatggatggcgtcaccattctcattccg
gtgccccttttggcgggcatggatactgagagctttgactggttggtgcctggcatgcgc
ctggagttggtgacggaactgattcgcactttgcctaaagccatccggcgtaccgtggtg
ccggccccggatttcgcggagcgcgcactgcccaagctcattgcctatgaatcaccattg
aaacaacagcttgctgatgtcctccgggagctaggcgcccagggcatcaacgcgtccgac
ttccggccatcgcaacttcctgagcacctgaagatgaactacgccgccgttgataagcgg
ggaaagatcattgactctgaccgcgatctggcggccttggtgcaacgccaggcgggtcat
atcaaggcatctgtttcccgggtgggccgcaaggcggaatccaaggcggtgaagaagtgg
actcccgataacctggggaaggtcgaagagaccgtggccaccgtcgttgacggacacgag
gtggtcgcctaccccgccttagtggcaaccccggagggcgttgagcttaaagtccacccc
accaaagccgcggccgacgccgccatgcttaccaccaccttgaccttgttgctccgggaa
atcaccgttcagcccggccccatggtcaagggacttcctttgcaacagcgcgttgccatt
gacaactacccccacggtggtgcgcaagggttggtggatgatgccagggtggccgccatt
cgcgacctgatgatggaaaaaggcgggccggtgcgggatccggaggaatttgcccggctc
ttagccgcagtaaaacccgaggttgcctcccgtgtacggcgtacggtggtggctctagca
cccgccatggtggaatttgccaacgccaagtcggagctggctaagtgggagggccccgcc
atcgacgatatgcggcaccaattggacttcttgttgcccaaaaatgccgtcaccattcat
gggctcatccatctccagcaccttccccgctatatccaggcgatcaatatccgcttggag
gaaatggccattgacccggacaaagacgcggaccgccaggatgaggttcacgaggcccac
gcctatttgaccaacaaactccgcaatctaccggccggccgcgagaaaaccaaggaggca
aaggaaattaagtggatgattgaggaactccgggtctccctttttgcccaacggttgggc
acagcacgtcccatctctttgcggcgggtccaaaaggcggttgacaaactccgctga
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