Entry |
|
Name |
|
KO |
|
Organism |
cphy Cnuibacter physcomitrellae
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:cphy00001]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
B5808_05435
09124 Replication and repair
03420 Nucleotide excision repair
B5808_05435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cphy03021]
B5808_05435
03400 DNA repair and recombination proteins [BR:cphy03400]
B5808_05435
Enzymes [BR:cphy01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B5808_05435
Transcription machinery [BR:cphy03021]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
B5808_05435
DNA repair and recombination proteins [BR:cphy03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
B5808_05435
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
complement(1153320..1154960)
|
AA seq |
546 aa
MPNGPLIVQSDRTVLLEVAHPDAEAARHELAAFAELERAPEHVHTYRVTRLGLWNARAAG
HTSDEILGVLERWSKFPVPQAVSVDVAETVARYGRLVIDRRDDGELVLRSTEPAILSEIA
RGKRVAPLLTGRVDDTSYTVQAWARGQLKQELIKLGWPADDLAGFTPGTPHDIDLDETAW
HLRDYQQQAVTSFVDHGSGVVVLPCGAGKTLVGAGAMAEIKANTLILVTNTVSARQWRSE
LLRRTSLTEDEIGEYSGAVKDVKPVTIATYQILTSKRGGAYRHLELLDALDWGLIVYDEV
HLLPAPVFKLTADLQARRRLGLTATLVREDGRESDVFSLIGPKRYDAPWKEIEAQGYISP
AECFEVRVDLSHSERLEYAAAADDERYRLAASAPEKLAATRELIDRHPGEQVLVIGQYLD
QLEALSEALDVPQITGATPVDERERLFQAFRDGEERILVVSKVANFSVDLPEASVAIQVS
GSFGSRQEEAQRLGRLLRPKESGHTASFYTLVTRDTVDAEFAQNRQRFLAEQGYSYRILD
ADTIAA |
NT seq |
1641 nt +upstreamnt +downstreamnt
atgcccaacggacctctcatcgtccagagcgaccgcaccgtgctcctcgaggtcgcccat
cccgacgccgaagccgcgcgccacgagctcgcggccttcgccgagctggagcgcgctccc
gagcacgtgcacacctaccgggtgacgcggctcggcctgtggaacgcgcgcgccgcgggc
cacacctccgacgagatcctgggcgtgctcgagcgctggtcgaagttcccggtgccgcag
gcggtgagcgtcgacgtcgccgagaccgtcgcccgctacggcaggctcgtgatcgaccgc
cgcgacgacggcgagctcgtcctgcgctccaccgagcccgcgatcctgtcggagatcgcc
cgcggcaagcgcgtcgcacccctcctcaccgggcgggtcgacgacacctcgtacacggtg
caggcgtgggcacgcgggcagctcaagcaggagctcatcaagctcggctggcccgccgac
gacctcgccggcttcacgccgggcacgccccacgacatcgacctcgacgagaccgcgtgg
cacctgcgcgactaccagcagcaggccgtcacgagcttcgtcgaccatggctcgggagtc
gtcgtgctcccctgcggcgcgggcaagacgctggtgggcgcgggcgcgatggccgagatc
aaggcgaacacgctcatcctcgtcaccaacaccgtctcggcgaggcagtggcgcagcgag
ctgctccgtcgcacgagcctcaccgaggacgagatcggcgagtactcgggcgcggtgaag
gacgtcaagccggtcacgattgcgacctaccagatcctcacctccaagcgcggcggggcg
taccgccacctcgagctgctcgacgcgctcgactggggcctcatcgtctacgacgaggtg
cacctcctccccgcccccgtgttcaagctcaccgccgacctccaggctcgccgtcggctc
ggcctcacggcgacgctcgtgcgggaggacggtcgcgagtccgacgtcttcagcctgatc
gggcccaagcgctacgacgcgccctggaaggagatcgaggcgcagggctacatctccccc
gcggagtgcttcgaggtgcgggtcgacctgtcgcactcggagcggctcgagtacgccgcg
gcggccgacgacgagcgctaccgcctcgcggcgagcgcccccgagaagctcgccgccacg
cgcgagctgatcgaccgtcacccgggcgagcaggtgctcgtcatcgggcagtacctcgac
cagctcgaggcgctgtcggaggccctcgacgtcccgcagatcaccggcgccaccccggtc
gacgagcgcgagcggctgttccaggcgttccgcgacggggaggagcggatcctcgtggtc
agcaaggtcgccaacttctcggtcgacctcccggaggcgtcggtggccatccaggtgtcg
ggctccttcggatcgcggcaggaggaggcgcagcggctcggccggctgctccgacccaag
gagtccggccacaccgcctcgttctacacgctcgtcacgcgcgacacggtggacgccgag
ttcgctcagaaccgccagcggttcctcgccgagcagggctactcgtaccggatcctcgac
gccgacacgatcgcagcgtag |