Cnuibacter physcomitrellae: B5808_06780
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Entry
B5808_06780 CDS
T04797
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cphy
Cnuibacter physcomitrellae
Pathway
cphy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cphy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B5808_06780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cphy03019
]
B5808_06780
Messenger RNA biogenesis [BR:
cphy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B5808_06780
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
ARJ04950
UniProt:
A0A1X9LST1
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Position
1438767..1440443
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AA seq
558 aa
AA seq
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MKSTIVDPPALAPGTLRIVPVGGLGEIGRNMTVFEYEGKLLIVDCGVLFPEENQPGVDLI
LPDFSVVRDRLDDVVGIVLTHGHEDHIGAVPYLLKLREDIPIIGSPLTLALTEAKLKEHR
ITPYTLDVREGQTEQLGPFECEFVAVNHSIPDALAVAIKTPAGVVLHTGDFKMDQLPLDG
RLTDLRSFARLGEEGVDLFLVDSTNADVPGFTPLEKDIGPVLESIIERAPRRVIVASFSS
HVHRVQQVLDAAHAHGRRVALLGRSMVRNMTIAAELGYLKVPEGVLIDFKKAGDIPDDRI
VYMSTGSQGEPMAVLSRMANLEHQIEVGEGDTVILASSLIPGNENAVYRVINGLTKLGAT
VVHKGNAKVHVSGHAAAGELLYCYNILKPKNVMPVHGEYRHLFANAALAIATGVPESHTI
LGDDGTVVDLRDGVATVVGQYDLGFVYVDGSSVGEITDADLKDRRILGEEGFISIIVVVE
AQTGRVIVGPEIHAKGFAEDESVFDGVKPKIAAALSEAVENGTRDTYALQQVVRRTIGRW
VNTKLRRRPMIVPLVIEA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaccatcgtcgatccccccgccctcgcaccgggcaccctccgcatcgtcccc
gtgggcggtctcggcgagatcggccgcaacatgaccgtgttcgagtacgagggcaagctg
ctcatcgtcgactgcggcgtgctgttccccgaggagaaccagcccggcgtcgacctgatc
ctccccgacttcagcgtcgtgcgcgatcgtctcgacgacgtcgtgggcatcgtgctcacc
cacgggcacgaggaccacatcggagccgtcccgtacctgctcaagctgcgcgaggacatc
cccatcatcggctcgccgctgacgctggccctcaccgaggcgaagctcaaggagcatcgc
atcacgccctacacgctcgacgtgcgcgagggccagacggagcagctcggcccgttcgag
tgcgagttcgtggcggtcaaccactcgatcccggatgcgctggccgtcgccatcaagacg
cccgccggcgtcgtgctgcacaccggcgacttcaagatggaccagctgccgctcgacggc
cggctgaccgatctccgctcgttcgcccgcctcggcgaggagggggtcgacctgttcctc
gtcgactccaccaacgccgacgtgcccggcttcacgccgctcgagaaggacatcggcccg
gtgctcgagtcgatcatcgagcgggcaccccgtcgcgtcatcgtggcgagcttctccagc
cacgtgcaccgcgtgcagcaggtgctcgacgccgcccacgcccacggtcgccgggtcgcg
ctcctcggccgctcgatggtgcgcaacatgaccatcgcggccgagctcggctacctcaag
gtgcccgagggcgtcctgatcgacttcaagaaggccggcgacatccccgacgaccgcatc
gtctacatgtcgaccgggtcgcagggcgagccgatggccgtgctcagtcgcatggcgaac
ctggagcaccagatcgaggtgggggagggcgacaccgtgatcctcgcctcgagcctcatc
ccgggcaacgagaacgccgtctaccgcgtcatcaacggactcacgaagctcggcgccacc
gtggtgcacaagggcaacgccaaggtgcacgtctccggtcacgcggccgccggcgagctc
ctgtactgctacaacatcctgaagccgaagaacgtcatgccggtgcacggtgagtaccgt
catctgttcgcgaacgcggcgctggcgatcgcgaccggcgtgcccgagtcccacacgatc
ctcggcgacgacggcaccgtggtcgacctccgagacggtgtggcgacggtggtcggccag
tacgacctcggcttcgtctacgtcgacggctccagcgtgggcgaaatcaccgatgccgac
ctcaaggatcgccggatcctcggcgaggaggggttcatctccatcatcgtcgtggtggag
gcgcagaccggccgggtcatcgtcggtccggagatccacgccaagggcttcgccgaggac
gagtctgtcttcgacggggtcaagccgaagatcgccgcggcgctctcggaggcggtcgag
aacggcacccgcgacacctatgcgctgcagcaggtggtgcggcgcaccatcggccgctgg
gtcaacacgaagctgcgccgccgtccgatgatcgtgccgctcgtcatcgaggcctga
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